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This lesson provides an overview of the current status in the field of neuroscientific ontologies, presenting examples of data organization and standards, particularly from neuroimaging and electrophysiology. 

Difficulty level: Intermediate
Duration: 33:41

This lecture covers the NIDM data format within BIDS to make your datasets more searchable, and how to optimize your dataset searches.

Difficulty level: Beginner
Duration: 12:33
Speaker: : David Keator

This lecture covers positron emission tomography (PET) imaging and the Brain Imaging Data Structure (BIDS), and how they work together within the PET-BIDS standard to make neuroscience more open and FAIR.

Difficulty level: Beginner
Duration: 12:06
Speaker: : Melanie Ganz

This lecture discusses how to standardize electrophysiology data organization to move towards being more FAIR.

Difficulty level: Beginner
Duration: 15:51

Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). Here, the HED Working Group presents an online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 

     

    Difficulty level: Beginner
    Duration: 03:37:42
    Speaker: :

    In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

    Difficulty level: Beginner
    Duration: 21:56
    Speaker: : Michael Schirner

    This is the first of two workshops on reproducibility in science, during which participants are introduced to concepts of FAIR and open science. After discussing the definition of and need for FAIR science, participants are walked through tutorials on installing and using Github and Docker, the powerful, open-source tools for versioning and publishing code and software, respectively.

    Difficulty level: Intermediate
    Duration: 1:20:58

    In this lesson, while learning about the need for increased large-scale collaborative science that is transparent in nature, users also are given a tutorial on using Synapse for facilitating reusable and reproducible research. 

    Difficulty level: Beginner
    Duration: 1:15:12
    Speaker: : Abhi Pratap

    This lesson contains the first part of the lecture Data Science and Reproducibility. You will learn about the development of data science and what the term currently encompasses, as well as how neuroscience and data science intersect. 

    Difficulty level: Beginner
    Duration: 32:18
    Speaker: : Ariel Rokem

    In this second part of the lecture Data Science and Reproducibility, you will learn how to apply the awareness of the intersection between neuroscience and data science (discussed in part one) to an understanding of the current reproducibility crisis in biomedical science and neuroscience. 

    Difficulty level: Beginner
    Duration: 31:31
    Speaker: : Ashley Juavinett

    The lecture provides an overview of the core skills and practical solutions required to practice reproducible research.

    Difficulty level: Beginner
    Duration: 1:25:17
    Speaker: : Fernando Perez

    This lecture provides an introduction to reproducibility issues within the fields of neuroimaging and fMRI, as well as an overview of tools and resources being developed to alleviate the problem.

    Difficulty level: Beginner
    Duration: 1:03:07
    Speaker: : Russell Poldrack

    This lecture provides a historical perspective on reproducibility in science, as well as the current limitations of neuroimaging studies to date. This lecture also lays out a case for the use of meta-analyses, outlining available resources to conduct such analyses. 

    Difficulty level: Beginner
    Duration: 55:39
    Speaker: : Angela Laird

    This workshop will introduce reproducible workflows and a range of tools along the themes of organisation, documentation, analysis, and dissemination. 

    Difficulty level: Beginner
    Duration: 01:28:43
    Speaker: :

    This lesson contains practical exercises which accompanies the first few lessons of the Neuroscience for Machine Learners (Neuro4ML) course. 

    Difficulty level: Intermediate
    Duration: 5:58
    Speaker: : Dan Goodman

    This video briefly goes over the exercises accompanying Week 6 of the Neuroscience for Machine Learners (Neuro4ML) course, Understanding Neural Networks.

    Difficulty level: Intermediate
    Duration: 2:43
    Speaker: : Marcus Ghosh
    Course:

    This lecture covers the description and characterization of an input-output relationship in a information-theoretic context. 

    Difficulty level: Beginner
    Duration: 1:35:33

    This lesson is part 1 of 2 of a tutorial on statistical models for neural data.

    Difficulty level: Beginner
    Duration: 1:45:48
    Speaker: : Jonathan Pillow

    This lesson is part 2 of 2 of a tutorial on statistical models for neural data.

    Difficulty level: Beginner
    Duration: 1:50:31
    Speaker: : Jonathan Pillow

    This lesson provides an introduction to modeling single neurons, as well as stability analysis of neural models.

    Difficulty level: Intermediate
    Duration: 1:26:06
    Speaker: : Bard Ermentrout