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FAIR neuroscience and EBRAINS tools for data sharing, analysis, and simulation

INCF

This workshop provides an opportunity to explore the advanced tools and techniques for data sharing, analysis, visualization, and simulation.

 

Reinforcement Learning

Neuromatch Academy

Neuromatch Academy aims to introduce traditional and emerging tools of computational neuroscience to trainees.

 
INCF TrainingSpace

Session 8: FAIR Data: The Role of Journals

INCF

Most neuroscience journals request authors to make their data publicly available in appropriate repositories. The requirements and policies put forward by journals vary, and the services provided for different types of data also differ considerably across repositories.

 
INCF TrainingSpace

Preprocessing Data in EEGLAB

Swartz Center for Computational Neuroscience

EEGLAB is an interactive MATLAB toolbox for processing continuous and event-related EEG, MEG, and other electrophysiological data incorporating independent component analysis (ICA), time/frequency analysis, artifact rejection, event-related statistics, and several useful modes of visualization of the averaged and single-trial data.

 
INCF TrainingSpace

Session 4: "Is This FAIR?": Transparency in EDI, Career Development, & Management

INCF

There is a growing recognition and adoption of open and FAIR science practices in neuroscience research. This is predominately regarded as scientific progress and has enabled significant opportunities for large, collaborative, team science. The efforts and practical work that go into creating an open and FAIR landscape extend far beyond just the science.

 
INCF TrainingSpace

Lifecycle of Human Electroencephalography/Event-Related Potential Data

Czech National Node for Neuroinformatics

This course is intended for those interested in electroencephalography (EEG) and event-related potentials (ERPs) techniques, and those interested in collecting, annotating, standardizing, storing, processing, sharing, and publishing data from electrical activity of the human brain.

 

Machine Learning

Neuromatch Academy

Neuromatch Academy aims to introduce traditional and emerging tools of computational neuroscience to trainees.

 

Optimal Control

Neuromatch Academy

Neuromatch Academy aims to introduce traditional and emerging tools of computational neuroscience to trainees.

 

INCF Assembly 2022 - Training Day 1

INCF

This course contains sessions from the first day of INCF's Neuroinformatics Assembly 2022.

 
INCF TrainingSpace

Session 3: Streamlining Cross-Platform Data Integration

INCF

This course corresponds to the third session of talks given at INCF's Neuroinformatics Assembly 2023. In this session, the talks revolve around the idea of cross-platform data integration, discussing processes and solutions for rapidly developing an integrated workflow across independent systems for the US BRAIN Initiative Cell Census. 

 

The Future of Medical Data Sharing in Clinical Neurosciences

EBRAINS

This workshop hosted by HBP, EBRAINS, and the European Academy of Neurology (EAN) aimed to identify and openly discuss all issues and challenges associated with data sharing in Europe: from ethics to data safety and privacy including those specific to data federation such as the development and validation of federated algorithms. 

 

 
INCF TrainingSpace

Session 9: Event Annotation in Neuroimaging Using HED: From Experiment to Analysis

INCF

This workshop delves into the need for, structure of, tools for, and use of hierarchical event descriptor (HED) annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. HED are a controlled vocabulary of terms describing events in a machine-actionable form so that algorithms can use the information without manual recoding.

 

Digital Health for Mental Health

Krembil Centre for Neuroinformatics

As technological improvements continue to facilitate innovations in the mental health space, researchers and clinicians are faced with novel opportunities and challenges regarding study design, diagnoses, treatments, and follow-up care. This course includes a lecture outlining these new developments, as well as a workshop which introduces users to Synapse, an open-source platform for collaborative data analysis. 

 

INCF Assembly 2022 - Training Day 2

INCF

This course contains sessions from the second day of INCF's Neuroinformatics Assembly 2022.

 

Decision Making

Neuromatch Academy

Neuromatch Academy aims to introduce traditional and emerging tools of computational neuroscience to trainees.

 
INCF TrainingSpace

Biophysical Models

INCF

This course consists of introductory lectures on different aspects of biophysical models. By following this course you will learn about various neuronal models, neuron anatomy and signaling, as well the numerous and complex cellular mechanisms underlying healthy brain function. 

 

Machine Learning (CONP)

This course begins with the conceptual basics of machine learning and then moves on to some Python-based applications of popular supervised learning algorithms to neuroscience data. This is followed by a series of lectures that explore the history and applications of deep learning, ending with a presentation on the potential of deep learning for neuroscience applications/mis-applications.

 

Digital Health for Mental Health

Krembil Centre for Neuroinformatics

As technological improvements continue to facilitate innovations in the mental health space, researchers and clinicians are faced with novel opportunities and challenges regarding study design, diagnoses, treatments, and follow-up care. This course includes a lecture outlining these new developments, as well as a workshop which introduces users to Synapse, an open-source platform for collaborative data analysis. 

 

Foundations of Data Science

Datalabcc

Data science relies on several important aspects of mathematics. In this course, you'll learn what forms of mathematics are most useful for data science, and see some worked examples of how math can solve important data science problems.

 
INCF TrainingSpace

Session 5: Infrastructure for Sensitive Data

INCF

This course consists of a three-part session from the second day of INCF's Neuroinformatics Assembly 2023. The lessons describe various on-going efforts within the fields of neuroinformatics and clinical neuroscience to adjust to the increasingly vast volumes of brain data being collected and stored.