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This lesson describes the principles underlying functional magnetic resonance imaging (fMRI), diffusion-weighted imaging (DWI), tractography, and parcellation. These tools and concepts are explained in a broader context of neural connectivity and mental health. 

Difficulty level: Intermediate
Duration: 1:47:22

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices. 

Difficulty level: Intermediate
Duration: 1:39:04

This lesson introduces the practical exercises which accompany the previous lessons on animal and human connectomes in the brain and nervous system. 

Difficulty level: Intermediate
Duration: 4:10
Speaker: : Dan Goodman

This lecture and tutorial focuses on measuring human functional brain networks, as well as how to account for inherent variability within those networks. 

Difficulty level: Intermediate
Duration: 50:44
Speaker: : Caterina Gratton

This lecture presents an overview of functional brain parcellations, as well as a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation.

Difficulty level: Advanced
Duration: 50:28
Speaker: : Pierre Bellec

This lesson gives a description of the BrainHealth Databank, a repository of many types of health-related data, whose aim is to accelerate research, improve care, and to help better understand and diagnose mental illness, as well as develop new treatments and prevention strategies. 

 

This lesson corresponds to slides 46-78 of the PDF below. 

Difficulty level: Beginner
Duration: 1:12:25
Speaker: : Joanna Yu

This lesson describes not only the need for precision medicine, but also the current state of the methods, pharmacogenetic approaches, utility and implementation of such care today.

 

This lesson corresponds to slides 1-50 of the PowerPoint below. 

Difficulty level: Beginner
Duration: 1:24:30
Speaker: : Dan Felsky

This lecture covers the needs and challenges involved in creating a FAIR ecosystem for neuroimaging research.

Difficulty level: Beginner
Duration: 12:26
Speaker: : Camille Maumet

This lecture covers how to make modeling workflows FAIR by working through a practical example, dissecting the steps within the workflow, and detailing the tools and resources used at each step.

Difficulty level: Beginner
Duration: 15:14

This lecture focuses on the structured validation process within computational neuroscience, including the tools, services, and methods involved in simulation and analysis.

Difficulty level: Beginner
Duration: 14:19
Speaker: : Michael Denker
Course:

This session provides users with an introduction to tools and resources that facilitate the implementation of FAIR in their research.

 

 

Difficulty level: Beginner
Duration: 38:36

This short talk addresses how to use VisuAlign to make nonlinear adjustments to 2D-to-3D registrations generated by QuickNII. 

Difficulty level: Beginner
Duration: 08:50
Speaker: : Maja Puchades

This talk aims to provide guidance regarding the myriad labelling methods for histological image data. 

Difficulty level: Beginner
Duration: 35:20
Speaker: : Sharon Yates

This lesson provides a cross-species comparison of neuron types in the rat and mouse brain. 

Difficulty level: Beginner
Duration: 17:16

This lecture concludes the course with an outline of future directions of the field of neuroscientific research data integration. 

Difficulty level: Beginner
Duration: 09:49
Speaker: : Jan G. Bjaalie

This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics. 

Difficulty level: Intermediate
Duration: 1:27:18
Speaker: : Dan Felsky

This lesson is an overview of transcriptomics, from fundamental concepts of the central dogma and RNA sequencing at the single-cell level, to how genetic expression underlies diversity in cell phenotypes. 

Difficulty level: Intermediate
Duration: 1:29:08

In this lesson, you will learn about data management within the Open Data Commons (ODC) framework, and in particular, how Spinal Cord Injury (SCI) data is stored, shared, and published. You will also hear about Frictionless Data, an open-source toolkit aimed at simplifying the data experience. 

Difficulty level: Beginner
Duration: 19:10

This talk describes the NIH-funded SPARC Data Structure, and how this project navigates ontology development while keeping in mind the FAIR science principles. 

Difficulty level: Beginner
Duration: 25:44
Speaker: : Fahim Imam

This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

Difficulty level: Beginner
Duration: 13:37