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This brief video provides a welcome and short introduction to the outline of the INCF Short Course in Neuroinformatics, held Seattle, Washington in October 2023, in coordination with the West Big Data Hub and the University of Washington. 

Difficulty level: Beginner
Duration: 4:58
Speaker: : Ariel Rokem

This opening lecture from INCF's Short Course in Neuroinformatics provides an overview of the field of neuroinformatics itself, as well as laying out an argument for the necessity for developing more sophisticated approaches towards FAIR data management principles in neuroscience. 

Difficulty level: Beginner
Duration: 1:19:14
Speaker: : Maryann Martone

This lesson aims to define computational neuroscience in general terms, while providing specific examples of highly successful computational neuroscience projects. 

Difficulty level: Beginner
Duration: 59:21
Speaker: : Alla Borisyuk

This lecture covers a wide range of aspects regarding neuroinformatics and data governance, describing both their historical developments and current trajectories. Particular tools, platforms, and standards to make your research more FAIR are also discussed.

Difficulty level: Beginner
Duration: 54:58
Speaker: : Franco Pestilli

This lesson gives an in-depth description of scientific workflows, from study inception and planning to dissemination of results. 

Difficulty level: Beginner
Duration: 44:41

Introduction of the Foundations of Machine Learning in Python course - Day 01.

High-Performance Computing and Analytics Lab, University of Bonn

Difficulty level: Beginner
Duration: 35:24
Speaker: : Elena Trunz
Course:

This lecture gives an introduction to the INCF Short Course: Introduction to Neuroinformatics. 

Difficulty level: Beginner
Duration: 34:27

Presented by the OHBM OpenScienceSIG, this lesson covers how containers can be useful for running the same software on different platforms and sharing analysis pipelines with other researchers.

Difficulty level: Beginner
Duration: 01:21:59

This lecture covers the NIDM data format within BIDS to make your datasets more searchable, and how to optimize your dataset searches.

Difficulty level: Beginner
Duration: 12:33
Speaker: : David Keator

This lecture covers positron emission tomography (PET) imaging and the Brain Imaging Data Structure (BIDS), and how they work together within the PET-BIDS standard to make neuroscience more open and FAIR.

Difficulty level: Beginner
Duration: 12:06
Speaker: : Melanie Ganz

This lecture discusses how to standardize electrophysiology data organization to move towards being more FAIR.

Difficulty level: Beginner
Duration: 15:51

Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). Here, the HED Working Group presents an online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 

     

    Difficulty level: Beginner
    Duration: 03:37:42
    Speaker: :

    In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

    Difficulty level: Beginner
    Duration: 21:56
    Speaker: : Michael Schirner

    In this lesson, while learning about the need for increased large-scale collaborative science that is transparent in nature, users also are given a tutorial on using Synapse for facilitating reusable and reproducible research. 

    Difficulty level: Beginner
    Duration: 1:15:12
    Speaker: : Abhi Pratap

    This lecture discusses what defines an integrative approach regarding research and methods, including various study designs and models which are appropriate choices when attempting to bridge data domains; a necessity when whole-person modelling. 

    Difficulty level: Beginner
    Duration: 1:28:14
    Speaker: : Dan Felsky

    This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context. 

    Difficulty level: Beginner
    Duration: 5:55
    Speaker: : Bing-Xing Huo

    This final lesson of the course consists of the panel discussion for Streamlining Cross-Platform Data Integration session during the first day of INCF's Neuroinformatics Assembly 2023. 

    Difficulty level: Beginner
    Duration: 50:16
    Speaker: :

    This lightning talk describes the heterogeneity of the MR field regarding types of scanners, data formats, protocols, and software/hardware versions, as well as the challenges and opportunities for unifying these datasets in a common interface, MRdataset.

    Difficulty level: Beginner
    Duration: 5:15
    Speaker: : Harsh Sinha

    This session covers the framework of the International Brain Lab (IBL) and the data architecture used for this project.

    Difficulty level: Beginner
    Duration: 23:37
    Speaker: : Kenneth Harris

    How does the brain learn? This lecture discusses the roles of development and adult plasticity in shaping functional connectivity.

    Difficulty level: Beginner
    Duration: 1:08:45
    Speaker: : Clay Reid