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This lecture covers the NIDM data format within BIDS to make your datasets more searchable, and how to optimize your dataset searches.

Difficulty level: Beginner
Duration: 12:33
Speaker: : David Keator

This lecture covers positron emission tomography (PET) imaging and the Brain Imaging Data Structure (BIDS), and how they work together within the PET-BIDS standard to make neuroscience more open and FAIR.

Difficulty level: Beginner
Duration: 12:06
Speaker: : Melanie Ganz

This lecture discusses how to standardize electrophysiology data organization to move towards being more FAIR.

Difficulty level: Beginner
Duration: 15:51

Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). Here, the HED Working Group presents an online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 

     

    Difficulty level: Beginner
    Duration: 03:37:42
    Speaker: :

    In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

    Difficulty level: Beginner
    Duration: 21:56
    Speaker: : Michael Schirner

    This short talk addresses how to use VisuAlign to make nonlinear adjustments to 2D-to-3D registrations generated by QuickNII. 

    Difficulty level: Beginner
    Duration: 08:50
    Speaker: : Maja Puchades

    This talk aims to provide guidance regarding the myriad labelling methods for histological image data. 

    Difficulty level: Beginner
    Duration: 35:20
    Speaker: : Sharon Yates

    This lesson provides a cross-species comparison of neuron types in the rat and mouse brain. 

    Difficulty level: Beginner
    Duration: 17:16

    This lecture concludes the course with an outline of future directions of the field of neuroscientific research data integration. 

    Difficulty level: Beginner
    Duration: 09:49
    Speaker: : Jan G. Bjaalie

    In this lesson, you will learn about data management within the Open Data Commons (ODC) framework, and in particular, how Spinal Cord Injury (SCI) data is stored, shared, and published. You will also hear about Frictionless Data, an open-source toolkit aimed at simplifying the data experience. 

    Difficulty level: Beginner
    Duration: 19:10

    This talk describes the NIH-funded SPARC Data Structure, and how this project navigates ontology development while keeping in mind the FAIR science principles. 

    Difficulty level: Beginner
    Duration: 25:44
    Speaker: : Fahim Imam

    This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

    Difficulty level: Beginner
    Duration: 13:37

    This video gives a brief introduction to the second session of talks from INCF's Neuroinformatics Assembly 2023. 

    Difficulty level: Beginner
    Duration: 3:55
    Speaker: : Trygve Leergard

    This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context. 

    Difficulty level: Beginner
    Duration: 5:55
    Speaker: : Bing-Xing Huo

    In this talk, you will learn about the standardization schema for data formats among two of the US BRAIN Initiative networks: the Cell Census Network (BICCN) and the Cell Atlas Network (BICAN). 

    Difficulty level: Beginner
    Duration: 14:58

    In this lesson, you will learn about the BRAIN Initiative Cell Atlas Network (BICAN) and how this project adopts a federated approach to data sharing. 

    Difficulty level: Beginner
    Duration: 11:23
    Speaker: : Owen White

    This talk discusses the BRAIN Initiative Cell Atlas Network (BICAN), taking a look specifically at how this network approaches the design, development, and maintenance of specimen and sequencing library portals. 

    Difficulty level: Beginner
    Duration: 15:08
    Speaker: : GQ Zhang

    This final lesson of the course consists of the panel discussion for Streamlining Cross-Platform Data Integration session during the first day of INCF's Neuroinformatics Assembly 2023. 

    Difficulty level: Beginner
    Duration: 50:16
    Speaker: :

    This lightning talk gives an outline of the DataLad ecosystem for large-scale collaborations, and how DataLad addresses challenges that may arise in such research cooperations.

    Difficulty level: Beginner
    Duration: 2:54

    This talk gives a brief overview of current efforts to collect and share the Brain Reference Architecture (BRA) data involved in the construction of a whole-brain architecture that assigns functions to major brain organs. 

    Difficulty level: Beginner
    Duration: 4:02