This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.

This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

In this lesson, you will learn about the BRAIN Initiative Cell Atlas Network (BICAN) and how this project adopts a federated approach to data sharing. 

In this second part of the lecture Data Science and Reproducibility, you will learn how to apply the awareness of the intersection between neuroscience and data science (discussed in part one) to an understanding of the current reproducibility crisis in biomedical science and neuroscience. 

This lecture covers the benefits and difficulties involved when re-using open datasets, and how metadata is important to the process.

This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.

In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

This is the Introductory Module to the Deep Learning Course at CDS, a course that covered the latest techniques in deep learning and representation learning, focusing on supervised and unsupervised deep learning, embedding methods, metric learning, convolutional and recurrent nets, with applications to computer vision, natural language understanding, and speech recognition.

This module covers the concepts of gradient descent and the backpropagation algorithm and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture covers concepts associated with neural nets, including rotation and squashing, and is a part of the Deep Learning Course at New York University's Center for Data Science (CDS).

This lesson provides a detailed description of some of the modules and architectures involved in the development of neural networks. 

This lecture covers the concept of neural nets training (tools, classification with neural nets, and PyTorch implementation) and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture covers the concept of parameter sharing: recurrent and convolutional nets and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture covers the concept of convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture discusses the concept of natural signals properties and the convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture covers the concept of recurrent neural networks: vanilla and gated (LSTM) and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture is a foundationational lecture for the concept of energy-based models with a particular focus on the joint embedding method and latent variable energy-based models (LV-EBMs) and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture covers the concept of inference in latent variable energy based models (LV-EBMs) and is a part of the Deep Learning Course at NYU's Center for Data Science. 

This panel discussion covers how energy based models are used and is a part of the Deep Learning Course at NYU's Center for Data Science.