This lesson consists of lecture and tutorial components, focusing on resources and tools which facilitate multi-scale brain modeling and simulation.
In this talk, challenges of handling complex neuroscientific data are discussed, as well as tools and services for the annotation, organization, storage, and sharing of these data.
This lecture describes the neuroscience data respository G-Node Infrastructure (GIN), which provides platform independent data access and enables easy data publishing.
This lesson provides an introduction to the course Neuroscience Data Integration Through Use of Digital Brain Atlases, during which attendees will learn about concepts for integration of research data, approaches and resources for assigning anatomical location to brain data, and infrastructure for sharing experimental brain research data.
This talk covers the various concepts, motivations, and trends within the neuroscientific community related to the sharing and integration of brain research data.
This lesson focuses on the neuroanatomy of the human brain, delving into macrostructures like cortices, lobes, and hemispheres, and microstructures like neurons and cortical laminae.
This lesson provides an introduction to the European open research infrastructure EBRAINS and its digital brain atlas resources.
In this lesson, attendees will learn about the challenges in assigning experimental brain data to specific locations, as well as the advantages and shortcomings of current location assignment procedures.
This lesson covers the inherent difficulties associated with integrating neuroscientific data, as well as the current methods and approaches to do so.
Attendees of this talk will learn about QuickNII, a tool for user-guided affine registration of 2D experimental image data to 3D atlas reference spaces, which also facilitates data integration through standardized coordinate systems.
This lesson provides an overview of DeepSlice, a Python package which aligns histology to the Allen Brain Atlas and Waxholm Rat Atlas using deep learning.
In this lesson, while learning about the need for increased large-scale collaborative science that is transparent in nature, users also are given a tutorial on using Synapse for facilitating reusable and reproducible research.
This lecture discusses what defines an integrative approach regarding research and methods, including various study designs and models which are appropriate choices when attempting to bridge data domains; a necessity when whole-person modelling.
Similarity Network Fusion (SNF) is a computational method for data integration across various kinds of measurements, aimed at taking advantage of the common as well as complementary information in different data types. This workshop walks participants through running SNF on EEG and genomic data using RStudio.
This lesson provides an introduction the International Neuroinformatics Coordinating Facility (INCF), its mission towards FAIR neuroscience, and future directions.
This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context.
This final lesson of the course consists of the panel discussion for Streamlining Cross-Platform Data Integration session during the first day of INCF's Neuroinformatics Assembly 2023.
This lightning talk describes the heterogeneity of the MR field regarding types of scanners, data formats, protocols, and software/hardware versions, as well as the challenges and opportunities for unifying these datasets in a common interface, MRdataset.
This session covers the framework of the International Brain Lab (IBL) and the data architecture used for this project.
This lesson provides an introduction to biologically detailed computational modelling of neural dynamics, including neuron membrane potential simulation and F-I curves.