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This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.

Difficulty level: Beginner
Duration: 1:16:04

This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

Difficulty level: Beginner
Duration: 13:37

In this lesson, you will learn about the BRAIN Initiative Cell Atlas Network (BICAN) and how this project adopts a federated approach to data sharing. 

Difficulty level: Beginner
Duration: 11:23
Speaker: : Owen White

In this second part of the lecture Data Science and Reproducibility, you will learn how to apply the awareness of the intersection between neuroscience and data science (discussed in part one) to an understanding of the current reproducibility crisis in biomedical science and neuroscience. 

Difficulty level: Beginner
Duration: 31:31
Speaker: : Ashley Juavinett

This lecture covers the benefits and difficulties involved when re-using open datasets, and how metadata is important to the process.

Difficulty level: Beginner
Duration: 11:20
Speaker: : Elizabeth DuPre

This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.

Difficulty level: Beginner
Duration: 00:49:06
Speaker: : Sebastian Urchs
Course:

KnowledgeSpace (KS) is a data discoverability portal and neuroscience encyclopedia that was developed to make it easier for the neuroscience community to find publicly available datasets that adhere to the FAIR Principles and to provide an integrated view of neuroscience concepts found in Wikipedia and NeuroLex linked with PubMed and 17 of the world's leading neuroscience repositories. In short, KS provides a single point of entry where reseaerchers can search for a neuroscience concept of interest and receive results that include: i. a description of the term found in Wikipedia/NeuroLex, ii. links to publicly available datasets related to the concept of interest, and iii. up-to-date references that support the concept of interests found in PubMed. APIs are available so that developers of other neuroscience research infrastructures can integrate KS components in their infrastructures. If your repository or your favorite repository is not indexed in KS, please contact us.

 

Difficulty level: Beginner
Duration: 6:14
Speaker: : Heather Topple

In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

Difficulty level: Beginner
Duration: 21:56
Speaker: : Michael Schirner

The number of patients with dementia is estimated to increase given the aging population. This will lead to a number of challenges in the future in terms of diagnosis and care for patients with dementia. To meet these needs such as early diagnsosis and development of prognostic biomarkers, large datasets, such as the federated datasets on dementia. The EAN Dementia and cognitive disorders scientific panel can play an important role as coordinator and connecting panel members who wish to participate in e.g. consortia.

Difficulty level: Intermediate
Duration: 15:39

This lesson gives an in-depth introduction of ethics in the field of artificial intelligence, particularly in the context of its impact on humans and public interest. As the healthcare sector becomes increasingly affected by the implementation of ever stronger AI algorithms, this lecture covers key interests which must be protected going forward, including privacy, consent, human autonomy, inclusiveness, and equity. 

Difficulty level: Beginner
Duration: 1:22:06
Speaker: : Daniel Buchman

This lesson describes a definitional framework for fairness and health equity in the age of the algorithm. While acknowledging the impressive capability of machine learning to positively affect health equity, this talk outlines potential (and actual) pitfalls which come with such powerful tools, ultimately making the case for collaborative, interdisciplinary, and transparent science as a way to operationalize fairness in health equity. 

Difficulty level: Beginner
Duration: 1:06:35
Speaker: : Laura Sikstrom

This lesson is the first part of a three-part series on the development of neuroinformatic infrastructure to ensure compliance with European data privacy standards and laws. 

Difficulty level: Beginner
Duration: 1:10:05
Speaker: : Michael Schirner

This is the second of three lectures around current challenges and opportunities facing neuroinformatic infrastructure for handling sensitive data. 

Difficulty level: Beginner
Duration: 48:26
Speaker: : Michael Schirner

This lesson contains the first part of the lecture Data Science and Reproducibility. You will learn about the development of data science and what the term currently encompasses, as well as how neuroscience and data science intersect. 

Difficulty level: Beginner
Duration: 32:18
Speaker: : Ariel Rokem

This lecture gives a tour of what neuroethics is and how it applies to neuroscience and neurotechnology, while also addressing justice concerns within both fields. 

Difficulty level: Beginner
Duration: 58:45
Speaker: : Tim Brown

This lecture presents selected theories of ethics as applied to questions raised by the Human Brain Project.

Difficulty level: Beginner
Duration: 38:49

The HBP as an ICT flagship project crucially relies on ICT and will contribute important input into the development of new computing principles and artefacts. Individuals working on the HBP should therefore be aware of the long history of ethical issues discussed in computing. This lessson provides an overview of the most widely discussed ethical issues in computing and demonstrate that privacy and data protection are by no means the only issue worth worrying about. 

Difficulty level: Beginner
Duration: 46:12
Speaker: : Bernd Stahl

This lecture explores two questions regarding the ethics of robot development and use. Firstly, the increasingly urgent question of the ethical use of robots: are there particular applications of robots that should be proscribed, in eldercare, or surveillance, or combat? Secondly, the talk deals with the longer-term question of whether intelligent robots themselves could or should be ethical.

Difficulty level: Beginner
Duration: 31:35
Speaker: : Alan Winfield

In this lesson, attendees will learn about the challenges involved in working with life scientists to enhance their capacity for understanding, and taking responsibility for, the social implications of their research.

Difficulty level: Beginner
Duration: 50:15
Speaker: : Nikolas Rose

This lecture considers some of the key social and ethical issues raised by the ‘big brain projects’ currently under way in Europe, the USA, China, Japan, and many other regions. 

Difficulty level: Beginner
Duration: 53:08
Speaker: : Nikolas Rose