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The Virtual Brain Node #10 Workshop: Personalized Multi-Scale Brain Simulation

Level
Intermediate

This workshop provides basic knowledge on personalized brain network modeling using the open-source simulation platform The Virtual Brain (TVB). Participants will gain theoretical knowledge and apply this knowledge to construct brain models, process multimodal neuroimaging data for reconstructing individual brains, run simulations, and use supporting neuroinformatics tools such as collaboratories, pipelines, workflows, and data repositories. Participants will be able to operate the neuroinformatics platform TVB.

Course Features
Lectures
Videos
Tutorials
Lessons of this Course
1
1
Duration:
1:10:41

This lesson introduces population models and the phase plane, and is part of the The Virtual Brain (TVB) Node 10 Series, a 4-day workshop dedicated to learning about the full brain simulation platform TVB, as well as brain imaging, brain simulation, personalised brain models, and TVB use cases.

2
2
Duration:
23:03
Speaker:

This tutorial covers how to import appropriate data into The Virtual Brain, as well as how to begin constructing detailed brain models.

3
3
Duration:
1:29:13

In this tutorial, you will learn how to run a typical TVB simulation. 

4
4
Duration:
42:43
Speaker:

This tutorial introduces The Virtual Mouse Brain (TVMB), walking users through the necessary steps for performing simulation operations on animal brain data. 

5
5
Duration:
36:10

This lesson introduces TVB-multi-scale extensions and other TVB tools which facilitate modeling and analyses of multi-scale data. 

6
6
Duration:
1:00:08

In this tutorial, you will learn the necessary steps in modeling the brain of one of the most commonly studied animals among non-human primates, the macaque. 

7
7
Duration:
39:05
Speaker:

This lecture delves into cortical (i.e., surface-based) brain simulations, as well as subcortical (i.e., deep brain) stimulations, covering the definitions, motivations, and implementations of both. 

8
8
Duration:
39:05
Speaker:

This lecture provides an introduction to entropy in general, and multi-scale entropy (MSE) in particular, highlighting the potential clinical applications of the latter. 

9
9
Duration:
1:40:52

This lecture gives an overview of how to prepare and preprocess neuroimaging (EEG/MEG) data for use in TVB.  

10
10
Duration:
1:36:57

In this lecture, you will learn about various neuroinformatic resources which allow for 3D reconstruction of brain models. 

11
11
Duration:
37:12

This lecture provides an general introduction to epilepsy, as well as why and how TVB can prove useful in building and testing epileptic models.