TVB EduPack (1) provides didactic use cases for The Virtual Brain. Typically a use case consists of a jupyter notebook and a didactic video. EduPack use cases help the user to reproduce TVB based publications or to get started quickly with TVB. EduCases demonstrate for example how to use TVB via the Collaboratory of the Human Brain Project, how to run multi-scale co-simulations with other simulators such as NEST, how to process imaging data to construct personalized virtual brains of healthy individuals and patients.
The Virtual Brain Education Pack (TVB EduPack)
Tutorial on how to use the image processing pipeline with the HBP collab. Authors: M. Schirner, P. Triebkorn, P. Ritter
Tutorial on how to use the TVB-NEST toolbox co-simulation in HBP collab. Authors: D. Perdikis, L. Domide, M. Schirner, P. Ritter
Tutorial on how to use TVB-NEST toolbox on your local computer. Authors: D. Perdikis, L. Domide, M. Schirner, P. Ritter
Tutorial on how to perform multi-scale simulation of Alzheimer's disease on The Virtual Brain Simulation Platform. Authors: L. Stefanovski, P. Triebkorn, M.A. Diaz-Cortes, A. Solodkin, V. Jirsa, A.R. McIntosh, P. Ritter
Audio slides presentation to accompany the paper titled: An automated pipeline for constructing personalized virtual brains from multimodal neuroimaging data. Authors: M. Schirner, S. Rothmeier, V. Jirsa, A.R. McIntosh, P. Ritter.
Supplement video for the publication: Inferring multi-scale neural mechanisms with brain network modelling. Authors: M. Schirner, A.R. McIntosh, V. Jirsa, G. Deco, P. Ritter
Tutorial on how to simulate brain tumor brains with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls. Authors: Hannelore Aerts, Michael Schirner, Ben Jeurissen, DIrk Van Roost, Eric Achten, Petra Ritter, Daniele Marinazzo
The tutorial comprises a didactic video and jupyter notebooks (reproducing publication: Falcon et al. 2016 eNeuro). Contributors: Daniele Marinazzo, Petra Ritter, Paul Triebkorn, Ana Solodkin