The Virtual Brain EduPack provides didactic use cases for The Virtual Brain (TVB). Typically a use case consists of a jupyter notebook and a didactic video. EduPack use cases help the user to reproduce TVB-based publications or to get started quickly with TVB. EduCases demonstrate how to use TVB via the Collaboratory of the Human Brain Project, how to run multi-scale co-simulations with other simulators such as NEST, as well as how to process imaging data to construct personalized virtual brains of healthy individuals and patients.
The Virtual Brain Education Pack (TVB EduPack)
This tutorial demonstrates how to use the image processing pipeline with the HBP collab.
This tutorial provides instruction on how to use the TVB-NEST toolbox co-simulation in HBP collab.
In this tutorial, you will learn how to use TVB-NEST toolbox on your local computer.
This tutorial provides instruction on how to perform multi-scale simulation of Alzheimer's disease on The Virtual Brain Simulation Platform.
This presentation accompanies the paper entitled: An automated pipeline for constructing personalized virtual brains from multimodal neuroimaging data (see link below to download publication).
This lesson consists of a supplementary video for the publication: Inferring multi-scale neural mechanisms with brain network modelling.
This tutorial provides instruction on how to simulate brain tumors with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls.
The tutorial on modelling strokes in TVB includes a didactic video and jupyter notebooks (reproducing publication: Falcon et al. 2016 eNeuro).