Skip to main content

This lecture provides an introduction to optogenetics, a biological technique to control the activity of neurons or other cell types with light.

Difficulty level: Beginner
Duration: 39:34
Speaker: : Adam Packer

This primer on optogenetics primer discusses how to manipulate neuronal populations with light at millisecond resolution and offers possible applications such as curing the blind and "playing the piano" with cortical neurons.

Difficulty level: Beginner
Duration: 59:06
Speaker: : Clay Reid

This lesson provides an overview of the current status in the field of neuroscientific ontologies, presenting examples of data organization and standards, particularly from neuroimaging and electrophysiology. 

Difficulty level: Intermediate
Duration: 33:41

This lecture covers the NIDM data format within BIDS to make your datasets more searchable, and how to optimize your dataset searches.

Difficulty level: Beginner
Duration: 12:33
Speaker: : David Keator

This lecture covers positron emission tomography (PET) imaging and the Brain Imaging Data Structure (BIDS), and how they work together within the PET-BIDS standard to make neuroscience more open and FAIR.

Difficulty level: Beginner
Duration: 12:06
Speaker: : Melanie Ganz

This lecture discusses how to standardize electrophysiology data organization to move towards being more FAIR.

Difficulty level: Beginner
Duration: 15:51

Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). Here, the HED Working Group presents an online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 

     

    Difficulty level: Beginner
    Duration: 03:37:42
    Speaker: :

    In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

    Difficulty level: Beginner
    Duration: 21:56
    Speaker: : Michael Schirner
    Course:

    Maximize Your Research With Cloud Workspaces is a talk aimed at researchers who are looking for innovative ways to set up and execute their life science data analyses in a collaborative, extensible, open-source cloud environment. This panel discussion is brought to you by MetaCell and scientists from leading universities who share their experiences of advanced analysis and collaborative learning through the Cloud.

     

    Difficulty level: Beginner
    Duration: 55:43

    This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context. 

    Difficulty level: Beginner
    Duration: 5:55
    Speaker: : Bing-Xing Huo

    This talk describes the challenges to sustained operability and success of consortia, why many of these groups flounder after just a few years, and what steps can be taken to mitigate such outcomes. 

    Difficulty level: Beginner
    Duration: 18:29
    Speaker: : Maryann Martone

    This talk discusses the BRAIN Initiative Cell Atlas Network (BICAN), taking a look specifically at how this network approaches the design, development, and maintenance of specimen and sequencing library portals. 

    Difficulty level: Beginner
    Duration: 15:08
    Speaker: : GQ Zhang

    In this talk, you will hear about the challenges and costs of being FAIR in the many scientific fields, as well as opportunities to transform the ecology of the academic crediting system. 

    Difficulty level: Beginner
    Duration: 14:56
    Speaker: : Zefan Zheng

    This brief talk describes the challenge of global data sharing and governance, as well as efforts of the the Brain Research International Data Governance & Exchange (BRIDGE) to develop ready-made workflows to share data globally. 

    Difficulty level: Beginner
    Duration: 6:47
    Speaker: : Kimberly Ray

    This talk describes how to use DataLad for your data management and curation techniques  when dealing with animal datasets, which often contain several disparate types of data, including MRI, microscopy, histology, electrocorticography, and behavioral measurements. 

    Difficulty level: Beginner
    Duration: 3:35

    This brief talk covers an analysis technique for multi-band, multi-echo fMRI data, applying a denoising framework which can be used in an automated pipeline.  

    Difficulty level: Beginner
    Duration: 4:45
    Speaker: : David Abbott

    This lightning talk describes an automated pipline for positron emission tomography (PET) data. 

    Difficulty level: Intermediate
    Duration: 7:27

    This lecture goes into detailed description of how to process workflows in the virtual research environment (VRE), including approaches for standardization, metadata, containerization, and constructing and maintaining scientific pipelines. 

    Difficulty level: Intermediate
    Duration: 1:03:55
    Speaker: : Patrik Bey

    This lesson gives a quick introduction to the rest of this course, Research Workflows for Collaborative Neuroscience

    Difficulty level: Beginner
    Duration: 3:23
    Speaker: : Dimitri Yatsenko

    This lesson provides an overview of how to conceptualize, design, implement, and maintain neuroscientific pipelines in via the cloud-based computational reproducibility platform Code Ocean. 

    Difficulty level: Beginner
    Duration: 17:01
    Speaker: : David Feng