This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.

This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

In this lesson, you will learn about the BRAIN Initiative Cell Atlas Network (BICAN) and how this project adopts a federated approach to data sharing. 

In this second part of the lecture Data Science and Reproducibility, you will learn how to apply the awareness of the intersection between neuroscience and data science (discussed in part one) to an understanding of the current reproducibility crisis in biomedical science and neuroscience. 

This lecture covers the benefits and difficulties involved when re-using open datasets, and how metadata is important to the process.

This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.

In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

Maximize Your Research With Cloud Workspaces is a talk aimed at researchers who are looking for innovative ways to set up and execute their life science data analyses in a collaborative, extensible, open-source cloud environment. This panel discussion is brought to you by MetaCell and scientists from leading universities who share their experiences of advanced analysis and collaborative learning through the Cloud.

This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context. 

This talk describes the challenges to sustained operability and success of consortia, why many of these groups flounder after just a few years, and what steps can be taken to mitigate such outcomes. 

This talk discusses the BRAIN Initiative Cell Atlas Network (BICAN), taking a look specifically at how this network approaches the design, development, and maintenance of specimen and sequencing library portals. 

In this talk, you will hear about the challenges and costs of being FAIR in the many scientific fields, as well as opportunities to transform the ecology of the academic crediting system. 

This brief talk describes the challenge of global data sharing and governance, as well as efforts of the the Brain Research International Data Governance & Exchange (BRIDGE) to develop ready-made workflows to share data globally. 

This talk describes how to use DataLad for your data management and curation techniques  when dealing with animal datasets, which often contain several disparate types of data, including MRI, microscopy, histology, electrocorticography, and behavioral measurements. 

This brief talk covers an analysis technique for multi-band, multi-echo fMRI data, applying a denoising framework which can be used in an automated pipeline.  

This lightning talk describes an automated pipline for positron emission tomography (PET) data. 

This lecture goes into detailed description of how to process workflows in the virtual research environment (VRE), including approaches for standardization, metadata, containerization, and constructing and maintaining scientific pipelines. 

This lesson gives a quick introduction to the rest of this course, Research Workflows for Collaborative Neuroscience. 

This lesson provides an overview of how to conceptualize, design, implement, and maintain neuroscientific pipelines in via the cloud-based computational reproducibility platform Code Ocean.