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This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.

Difficulty level: Beginner
Duration: 1:16:04

This talk describes the relevance and power of using brain atlases as part of one's data integration pipeline. 

Difficulty level: Beginner
Duration: 15:37
Speaker: : Timo Dickscheid

In this lesson, you will learn how to understand data management plans and why data sharing is important. 

Difficulty level: Beginner
Duration: 44:24
Speaker: : Jenny Muilenburg

This quick visual walkthrough presents the steps required in uploading data into a brainlife project using the graphical user interface (GUI). 

Difficulty level: Beginner
Duration: 2:00
Speaker: :

This short walkthrough documents the steps needed to find a dataset in OpenNeuro, a free and open platform for sharing MRI, MEG, EEG, iEEG, ECoG, ASL, and PET data, and import it directly to a brainlife project. 

Difficulty level: Beginner
Duration: 0:35
Speaker: :

This lesson describes and shows four different ways one may upload their data to brainlife.io.

Difficulty level: Beginner
Duration: 6:35
Speaker: :

This lecture covers why data sharing and other collaborative practices are important, how these practices are developed, and the challenges involved in their development and implementation.

Difficulty level: Beginner
Duration: 11:41
Speaker: : Joost Wagenaar

This lecture discusses the FAIR principles as they apply to electrophysiology data and metadata, the building blocks for community tools and standards, platforms and grassroots initiatives, and the challenges therein.

Difficulty level: Beginner
Duration: 8:11
Speaker: : Thomas Wachtler

This lecture contains an overview of electrophysiology data reuse within the EBRAINS ecosystem.

Difficulty level: Beginner
Duration: 15:57
Speaker: : Andrew Davison

This lecture contains an overview of the Distributed Archives for Neurophysiology Data Integration (DANDI) archive, its ties to FAIR and open-source, integrations with other programs, and upcoming features.

Difficulty level: Beginner
Duration: 13:34

This lesson provides a short overview of the main features of the Canadian Open Neuroscience Platform (CONP) Portal, a web interface that facilitates open science for the neuroscience community by simplifying global access to and sharing of datasets and tools. The Portal internalizes the typical cycle of a research project, beginning with data acquisition, followed by data processing with published tools, and ultimately the publication of results with a link to the original dataset.

Difficulty level: Beginner
Duration: 14:03

This is the Introductory Module to the Deep Learning Course at CDS, a course that covered the latest techniques in deep learning and representation learning, focusing on supervised and unsupervised deep learning, embedding methods, metric learning, convolutional and recurrent nets, with applications to computer vision, natural language understanding, and speech recognition.

Difficulty level: Intermediate
Duration: 50:17

This module covers the concepts of gradient descent and the backpropagation algorithm and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate
Duration: 1:51:03
Speaker: : Yann LeCun

This lecture covers concepts associated with neural nets, including rotation and squashing, and is a part of the Deep Learning Course at New York University's Center for Data Science (CDS).

Difficulty level: Intermediate
Duration: 1:01:53
Speaker: : Alfredo Canziani

This lesson provides a detailed description of some of the modules and architectures involved in the development of neural networks. 

Difficulty level: Intermediate
Duration: 1:42:26

This lecture covers the concept of neural nets training (tools, classification with neural nets, and PyTorch implementation) and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate
Duration: 1:05:47
Speaker: : Alfredo Canziani

This lecture covers the concept of parameter sharing: recurrent and convolutional nets and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate
Duration: 1:59:47

This lecture covers the concept of convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate
Duration: 51:40
Speaker: : Yann LeCun

This lecture discusses the concept of natural signals properties and the convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate
Duration: 1:09:12
Speaker: : Alfredo Canziani

This lecture covers the concept of recurrent neural networks: vanilla and gated (LSTM) and is a part of the Deep Learning Course at NYU's Center for Data Science.

Difficulty level: Intermediate
Duration: 1:05:36
Speaker: : Alfredo Canziani