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This talk describes the NIH-funded SPARC Data Structure, and how this project navigates ontology development while keeping in mind the FAIR science principles. 

Difficulty level: Beginner
Duration: 25:44
Speaker: : Fahim Imam
Course:

This lecture covers structured data, databases, federating neuroscience-relevant databases, and ontologies. 

Difficulty level: Beginner
Duration: 1:30:45
Speaker: : Maryann Martone

This lecture covers FAIR atlases, including their background and construction, as well as how they can be created in line with the FAIR principles.

Difficulty level: Beginner
Duration: 14:24
Speaker: : Heidi Kleven

This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.

Difficulty level: Beginner
Duration: 1:16:04

This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

Difficulty level: Beginner
Duration: 13:37

In this lesson, you will learn about the BRAIN Initiative Cell Atlas Network (BICAN) and how this project adopts a federated approach to data sharing. 

Difficulty level: Beginner
Duration: 11:23
Speaker: : Owen White

In this second part of the lecture Data Science and Reproducibility, you will learn how to apply the awareness of the intersection between neuroscience and data science (discussed in part one) to an understanding of the current reproducibility crisis in biomedical science and neuroscience. 

Difficulty level: Beginner
Duration: 31:31
Speaker: : Ashley Juavinett

This lecture covers the benefits and difficulties involved when re-using open datasets, and how metadata is important to the process.

Difficulty level: Beginner
Duration: 11:20
Speaker: : Elizabeth DuPre

This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.

Difficulty level: Beginner
Duration: 00:49:06
Speaker: : Sebastian Urchs
Course:

KnowledgeSpace (KS) is a data discoverability portal and neuroscience encyclopedia that was developed to make it easier for the neuroscience community to find publicly available datasets that adhere to the FAIR Principles and to provide an integrated view of neuroscience concepts found in Wikipedia and NeuroLex linked with PubMed and 17 of the world's leading neuroscience repositories. In short, KS provides a single point of entry where reseaerchers can search for a neuroscience concept of interest and receive results that include: i. a description of the term found in Wikipedia/NeuroLex, ii. links to publicly available datasets related to the concept of interest, and iii. up-to-date references that support the concept of interests found in PubMed. APIs are available so that developers of other neuroscience research infrastructures can integrate KS components in their infrastructures. If your repository or your favorite repository is not indexed in KS, please contact us.

 

Difficulty level: Beginner
Duration: 6:14
Speaker: : Heather Topple

In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

Difficulty level: Beginner
Duration: 21:56
Speaker: : Michael Schirner

This lecture contains an overview of the Distributed Archives for Neurophysiology Data Integration (DANDI) archive, its ties to FAIR and open-source, integrations with other programs, and upcoming features.

Difficulty level: Beginner
Duration: 13:34

This lesson gives an introduction to the Mathematics chapter of Datalabcc's Foundations in Data Science series.

Difficulty level: Beginner
Duration: 2:53
Speaker: : Barton Poulson

This lesson serves a primer on elementary algebra.

Difficulty level: Beginner
Duration: 3:03
Speaker: : Barton Poulson

This lesson provides a primer on linear algebra, aiming to demonstrate how such operations are fundamental to many data science. 

Difficulty level: Beginner
Duration: 5:38
Speaker: : Barton Poulson

In this lesson, users will learn about linear equation systems, as well as follow along some practical use cases.

Difficulty level: Beginner
Duration: 5:24
Speaker: : Barton Poulson

This talk gives a primer on calculus, emphasizing its role in data science.

Difficulty level: Beginner
Duration: 4:17
Speaker: : Barton Poulson

This lesson clarifies how calculus relates to optimization in a data science context. 

Difficulty level: Beginner
Duration: 8:43
Speaker: : Barton Poulson

This lesson covers Big O notation, a mathematical notation that describes the limiting behavior of a function as it tends towards a certain value or infinity, proving useful for data scientists who want to evaluate their algorithms' efficiency.

Difficulty level: Beginner
Duration: 5:19
Speaker: : Barton Poulson

This lesson serves as a primer on the fundamental concepts underlying probability. 

Difficulty level: Beginner
Duration: 7:33
Speaker: : Barton Poulson