This tutorial demonstrates how to use the differential search feature of the Allen Mouse Brain Atlas to find gene markers for different regions of the brain, as well as to visualize this gene expression in three-dimensional space. Differential search is also available for the Allen Developing Mouse Brain Atlas and the Allen Human Brain Atlas.
This lesson gives an introduction, opening statements, and motivating arguments for this workshop.
This module covers some basic anatomy such as the brain’s major divisions (brainstem, cerebellum, cerebrum), the cerebral lobes (frontal, temporal, parietal, and occipital), the central and peripheral nervous systems, theories of cognition, and brain orientation terms.
This short talk addresses how to use VisuAlign to make nonlinear adjustments to 2D-to-3D registrations generated by QuickNII.
This talk aims to provide guidance regarding the myriad labelling methods for histological image data.
This lesson provides a cross-species comparison of neuron types in the rat and mouse brain.
This lecture concludes the course with an outline of future directions of the field of neuroscientific research data integration.
In this lesson, you will learn about data management within the Open Data Commons (ODC) framework, and in particular, how Spinal Cord Injury (SCI) data is stored, shared, and published. You will also hear about Frictionless Data, an open-source toolkit aimed at simplifying the data experience.
This talk describes the NIH-funded SPARC Data Structure, and how this project navigates ontology development while keeping in mind the FAIR science principles.
This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching.
This video gives a brief introduction to the second session of talks from INCF's Neuroinformatics Assembly 2023.
This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context.
In this talk, you will learn about the standardization schema for data formats among two of the US BRAIN Initiative networks: the Cell Census Network (BICCN) and the Cell Atlas Network (BICAN).
In this lesson, you will learn about the BRAIN Initiative Cell Atlas Network (BICAN) and how this project adopts a federated approach to data sharing.
This talk discusses the BRAIN Initiative Cell Atlas Network (BICAN), taking a look specifically at how this network approaches the design, development, and maintenance of specimen and sequencing library portals.
This final lesson of the course consists of the panel discussion for Streamlining Cross-Platform Data Integration session during the first day of INCF's Neuroinformatics Assembly 2023.
This lightning talk gives an outline of the DataLad ecosystem for large-scale collaborations, and how DataLad addresses challenges that may arise in such research cooperations.
This talk gives a brief overview of current efforts to collect and share the Brain Reference Architecture (BRA) data involved in the construction of a whole-brain architecture that assigns functions to major brain organs.
This lesson is the first part of a three-part series on the development of neuroinformatic infrastructure to ensure compliance with European data privacy standards and laws.
This lesson gives a quick introduction to the rest of this course, Research Workflows for Collaborative Neuroscience.