Lesson type
Difficulty level
This lecture covers the benefits and difficulties involved when re-using open datasets, and how metadata is important to the process.
Difficulty level: Beginner
Duration: 11:20
Speaker: : Elizabeth DuPre
This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.
Difficulty level: Beginner
Duration: 00:49:06
Speaker: : Sebastian Urchs
Course:
KnowledgeSpace (KS) is a data discoverability portal and neuroscience encyclopedia that was developed to make it easier for the neuroscience community to find publicly available datasets that adhere to the FAIR Principles and to provide an integrated view of neuroscience concepts found in Wikipedia and NeuroLex linked with PubMed and 17 of the world's leading neuroscience repositories. In short, KS provides a single point of entry where reseaerchers can search for a neuroscience concept of interest and receive results that include: i. a description of the term found in Wikipedia/NeuroLex, ii. links to publicly available datasets related to the concept of interest, and iii. up-to-date references that support the concept of interests found in PubMed. APIs are available so that developers of other neuroscience research infrastructures can integrate KS components in their infrastructures. If your repository or your favorite repository is not indexed in KS, please contact us.
Difficulty level: Beginner
Duration: 6:14
Speaker: : Heather Topple
In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments.
Difficulty level: Beginner
Duration: 21:56
Speaker: : Michael Schirner
Learn how to create a standard extracellular electrophysiology dataset in NWB using Python.
Difficulty level: Intermediate
Duration: 23:10
Speaker: : Ryan Ly
Learn how to create a standard calcium imaging dataset in NWB using Python.
Difficulty level: Intermediate
Duration: 31:04
Speaker: : Ryan Ly
In this tutorial, you will learn how to create a standard intracellular electrophysiology dataset in NWB using Python.
Difficulty level: Intermediate
Duration: 20:23
Speaker: : Pamela Baker
In this tutorial, you will learn how to use the icephys-metadata extension to enter meta-data detailing your experimental paradigm.
Difficulty level: Intermediate
Duration: 27:18
Speaker: : Oliver Ruebel
This lesson provides instructions on how to build and share extensions in NWB.
Difficulty level: Advanced
Duration: 20:29
Speaker: : Ryan Ly
Learn how to build custom APIs for extension.
Difficulty level: Advanced
Duration: 25:40
Speaker: : Andrew Tritt
This lesson provides instruction on advanced writing strategies in HDF5 that are accessible through PyNWB.
Difficulty level: Advanced
Duration: 23:00
Speaker: : Oliver Ruebel
In this tutorial, users learn how to create a standard extracellular electrophysiology dataset in NWB using MATLAB.
Difficulty level: Intermediate
Duration: 45:46
Speaker: : Ben Dichter
Learn how to create a standard calcium imaging dataset in NWB using MATLAB.
Difficulty level: Intermediate
Duration: 39:10
Speaker: : Ben Dichter
Learn how to create a standard intracellular electrophysiology dataset in NWB.
Difficulty level: Intermediate
Duration: 20:22
Speaker: : Pamela Baker
This lesson provides a tutorial on how to handle writing very large data in MatNWB.
Difficulty level: Advanced
Duration: 16:18
Speaker: : Ben Dichter
This lesson gives an overview of the Brainstorm package for analyzing extracellular electrophysiology, including preprocessing, spike sorting, trial alignment, and spectrotemporal decomposition.
Difficulty level: Intermediate
Duration: 47:47
Speaker: : Konstantinos Nasiotis
This lesson provides an overview of the CaImAn package, as well as a demonstration of usage with NWB.
Difficulty level: Intermediate
Duration: 44:37
Speaker: : Andrea Giovannucci
This lesson gives an overview of the SpikeInterface package, including demonstration of data loading, preprocessing, spike sorting, and comparison of spike sorters.
Difficulty level: Intermediate
Duration: 1:10:28
Speaker: : Alessio Buccino
In this lesson, users will learn about the NWBWidgets package, including coverage of different data types, and information for building custom widgets within this framework.
Difficulty level: Intermediate
Duration: 47:15
Speaker: : Ben Dichter
This video explains what metadata is, why it is important, and how you can organize your metadata to increase the FAIRness of your data on EBRAINS.
Difficulty level: Beginner
Duration: 17:23
Speaker: : Ulrike Schlegel