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CaImAn for Optical Physiology Processing and Analysis

Difficulty level

This lesson provides an overview of the CaImAn package, as well as a demonstration of usage with NWB.

Topics covered in this lesson
  • Optical physiology
  • Motion correction
  • ROI segmentation
  • Quality control
  • NWB interface

What is NWB, with short intro to NWB-enabled tools

Technology requirement

Python, CalmAn