CaImAn for optical physiology processing and analysis

CaImAn for optical physiology processing and analysis

By
NWB Core Development Team
Difficulty level
Intermediate
Speaker
Andrea Giovannucci
Type
Code
Lectures
Tools
Video
Duration
44:37
Topic
Electrophysiology
Standards and best practices

Overview of the CaImAn package, and demonstration of usage with NWB

Topics covered in this lesson
  • Optical physiology
  • Motion correction
  • ROI segmentation
  • Quality control
  • NWB interface
External Links
Link to CaImAn repository
Link to NWB website
Prerequisites

What is NWB, with short intro to NWB-enabled tools

Technology requirement

Python, caiman

 

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Introduction to Neurodata Without Borders (NWB) for Python users II