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Difficulty level
This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.
Difficulty level: Beginner
Duration: 1:16:04
Speaker: : Erin Dickie and Sejal Patel
This lesson provides a quick tour of some data repositories and how to download and manipulate data from them.
Difficulty level: Beginner
Duration: 00:49:06
Speaker: : Sebastian Urchs
Course:
KnowledgeSpace (KS) is a data discoverability portal and neuroscience encyclopedia that was developed to make it easier for the neuroscience community to find publicly available datasets that adhere to the FAIR Principles and to provide an integrated view of neuroscience concepts found in Wikipedia and NeuroLex linked with PubMed and 17 of the world's leading neuroscience repositories. In short, KS provides a single point of entry where reseaerchers can search for a neuroscience concept of interest and receive results that include: i. a description of the term found in Wikipedia/NeuroLex, ii. links to publicly available datasets related to the concept of interest, and iii. up-to-date references that support the concept of interests found in PubMed. APIs are available so that developers of other neuroscience research infrastructures can integrate KS components in their infrastructures. If your repository or your favorite repository is not indexed in KS, please contact us.
Difficulty level: Beginner
Duration: 6:14
Speaker: : Heather Topple
Course:
This lecture introduces neuroscience concepts and methods such as fMRI, visual respones in BOLD data, and the eccentricity of visual receptive fields.
Difficulty level: Intermediate
Duration: 7:15
Speaker: : Mike X. Cohen
Course:
In this tutorial, users learn how to compute and visualize a t-test on experimental condition differences.
Difficulty level: Intermediate
Duration: 17:54
Speaker: : Mike X. Cohen
This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics.
Difficulty level: Intermediate
Duration: 1:27:18
Speaker: : Dan Felsky
Course:
This video will document how to run a correlation analysis between the gray matter volume of two different structures using the output from brainlife app-freesurfer-stats.
Difficulty level: Beginner
Duration: 1:33
Speaker: :