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The Mouse Phenome Database (MPD) provides access to primary experimental trait data, genotypic variation, protocols and analysis tools for mouse genetic studies. Data are contributed by investigators worldwide and represent a broad scope of phenotyping endpoints and disease-related traits in naïve mice and those exposed to drugs, environmental agents or other treatments. MPD ensures rigorous curation of phenotype data and supporting documentation using relevant ontologies and controlled vocabularies. As a repository of curated and integrated data, MPD provides a means to access/re-use baseline data, as well as allows users to identify sensitized backgrounds for making new mouse models with genome editing technologies, analyze trait co-inheritance, benchmark assays in their own laboratories, and many other research applications. MPD’s primary source of funding is NIDA. For this reason, a majority of MPD data is neuro- and behavior-related.

Difficulty level: Beginner
Duration: 55:36
Speaker: : Elissa Chesler
Course:

This lecture covers modeling the neuron in silicon, modeling vision and audition, and sensory fusion using a deep network. 

Difficulty level: Beginner
Duration: 1:32:17
Speaker: : Shih-Chii Liu

This lesson gives an overview of past and present neurocomputing approaches and hybrid analog/digital circuits that directly emulate the properties of neurons and synapses.

Difficulty level: Beginner
Duration: 41:57
Speaker: : Giacomo Indiveri

Presentation of the Brian neural simulator, where models are defined directly by their mathematical equations and code is automatically generated for each specific target.

Difficulty level: Beginner
Duration: 20:39
Speaker: : Giacomo Indiveri

This lecture covers the NIDM data format within BIDS to make your datasets more searchable, and how to optimize your dataset searches.

Difficulty level: Beginner
Duration: 12:33
Speaker: : David Keator

This lecture covers positron emission tomography (PET) imaging and the Brain Imaging Data Structure (BIDS), and how they work together within the PET-BIDS standard to make neuroscience more open and FAIR.

Difficulty level: Beginner
Duration: 12:06
Speaker: : Melanie Ganz

This lecture discusses how to standardize electrophysiology data organization to move towards being more FAIR.

Difficulty level: Beginner
Duration: 15:51

Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). Here, the HED Working Group presents an online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 

     

    Difficulty level: Beginner
    Duration: 03:37:42
    Speaker: :

    In this lesson, attendees will learn about the data structure standards, specifically the Brain Imaging Data Structure (BIDS), an INCF-endorsed standard for organizing, annotating, and describing data collected during neuroimaging experiments. 

    Difficulty level: Beginner
    Duration: 21:56
    Speaker: : Michael Schirner

    This lesson gives an introduction to the Mathematics chapter of Datalabcc's Foundations in Data Science series.

    Difficulty level: Beginner
    Duration: 2:53
    Speaker: : Barton Poulson

    This lesson serves a primer on elementary algebra.

    Difficulty level: Beginner
    Duration: 3:03
    Speaker: : Barton Poulson

    This lesson provides a primer on linear algebra, aiming to demonstrate how such operations are fundamental to many data science. 

    Difficulty level: Beginner
    Duration: 5:38
    Speaker: : Barton Poulson

    In this lesson, users will learn about linear equation systems, as well as follow along some practical use cases.

    Difficulty level: Beginner
    Duration: 5:24
    Speaker: : Barton Poulson

    This talk gives a primer on calculus, emphasizing its role in data science.

    Difficulty level: Beginner
    Duration: 4:17
    Speaker: : Barton Poulson

    This lesson clarifies how calculus relates to optimization in a data science context. 

    Difficulty level: Beginner
    Duration: 8:43
    Speaker: : Barton Poulson

    This lesson covers Big O notation, a mathematical notation that describes the limiting behavior of a function as it tends towards a certain value or infinity, proving useful for data scientists who want to evaluate their algorithms' efficiency.

    Difficulty level: Beginner
    Duration: 5:19
    Speaker: : Barton Poulson

    This lesson serves as a primer on the fundamental concepts underlying probability. 

    Difficulty level: Beginner
    Duration: 7:33
    Speaker: : Barton Poulson

    Serving as good refresher, this lesson explains the maths and logic concepts that are important for programmers to understand, including sets, propositional logic, conditional statements, and more.

    This compilation is courtesy of freeCodeCamp.

    Difficulty level: Beginner
    Duration: 1:00:07
    Speaker: : Shawn Grooms

    This lesson provides a useful refresher which will facilitate the use of Matlab, Octave, and various matrix-manipulation and machine-learning software.

    This lesson was created by RootMath.

    Difficulty level: Beginner
    Duration: 1:21:30
    Speaker: :
    Course:

    This lecture covers the description and characterization of an input-output relationship in a information-theoretic context. 

    Difficulty level: Beginner
    Duration: 1:35:33