This lesson describes the Neuroscience Gateway , which facilitates access and use of National Science Foundation High Performance Computing resources by neuroscientists.

This lesson gives an introduction to high-performance computing with the Compute Canada network, first providing an overview of use cases for HPC and then a hands-on tutorial. Though some examples might seem specific to the Calcul Québec, all computing clusters in the Compute Canada network share the same software modules and environments.

The Mouse Phenome Database (MPD) provides access to primary experimental trait data, genotypic variation, protocols and analysis tools for mouse genetic studies. Data are contributed by investigators worldwide and represent a broad scope of phenotyping endpoints and disease-related traits in naïve mice and those exposed to drugs, environmental agents or other treatments. MPD ensures rigorous curation of phenotype data and supporting documentation using relevant ontologies and controlled vocabularies. As a repository of curated and integrated data, MPD provides a means to access/re-use baseline data, as well as allows users to identify sensitized backgrounds for making new mouse models with genome editing technologies, analyze trait co-inheritance, benchmark assays in their own laboratories, and many other research applications. MPD’s primary source of funding is NIDA. For this reason, a majority of MPD data is neuro- and behavior-related.

This lecture goes into detailed description of how to process workflows in the virtual research environment (VRE), including approaches for standardization, metadata, containerization, and constructing and maintaining scientific pipelines. 

This lesson provides an overview of how to conceptualize, design, implement, and maintain neuroscientific pipelines in via the cloud-based computational reproducibility platform Code Ocean. 

In this workshop talk, you will receive a tour of the Code Ocean ScienceOps Platform, a centralized cloud workspace for all teams. 

This lecture covers a wide range of aspects regarding neuroinformatics and data governance, describing both their historical developments and current trajectories. Particular tools, platforms, and standards to make your research more FAIR are also discussed.

This lecture introduces you to the basics of the Amazon Web Services public cloud. It covers the fundamentals of cloud computing and goes through both the motivations and processes involved in moving your research computing to the cloud.

Introduction of the Foundations of Machine Learning in Python course - Day 01.

High-Performance Computing and Analytics Lab, University of Bonn

Optimization for machine learning - Day 02 lecture of the Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Linear Algebra for Machine Learning - Day 03 lecture of the Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Support Vector Machines -  Day 06 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Decision Trees and Random Forests -  Day 07 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Clustering and Density Estimation -  Day 08 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Dimensionality Reduction -  Day 09 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Introduction to Neural Networks -  Day 10 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Introduction to Convolutional Neural Networks  -  Day 11 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Initialization, Optimization, and Regularization  -  Day 12 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

U-Nets for medical Image-Segmentation  -  Day 13 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn

Sequence Processing -  Day 15 lecture of the  Foundations of Machine Learning in Python course.

High-Performance Computing and Analytics Lab, University of Bonn