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INCF TrainingSpace

Deep Learning: Optimization

NYU Center for Data Science

This module covers the concepts of gradient descent, stochastic gradient descent, and momentum. It is a part of the Deep Learning Course at NYU's Center for Data Science, a course that covered the latest techniques in deep learning and representation learning, focusing on supervised and unsupervised deep learning, embedding methods, metric learning, convolutional and recurrent nets, with applications to computer vision, natural language understanding, and speech recognition. Pr

 

Current Methods in Neurotechnology

NeurotechEU

The lecture series focuses on current trends in modern techniques in neuroscience. Inspiring scientists from the NeurotechEU Alliance will give an overview of the latest advances and developments.

 

Introduction to Neurodata Without Borders (NWB) for MATLAB Users I

NWB Core Development Team

The Neurodata Without Borders: Neurophysiology project (NWB, https://www.nwb.org/) is an effort to standardize the description and storage of neurophysiology data and metadata. NWB enables data sharing and reuse and reduces the energy-barrier to applying data analytics both within and across labs. Several laboratories, including the Allen Institute for Brain Science, have wholeheartedly adopted NWB.

 
INCF TrainingSpace

Session 4: "Is This FAIR?": Transparency in EDI, Career Development, & Management

INCF

There is a growing recognition and adoption of open and FAIR science practices in neuroscience research. This is predominately regarded as scientific progress and has enabled significant opportunities for large, collaborative, team science. The efforts and practical work that go into creating an open and FAIR landscape extend far beyond just the science.

 

Publishing

This course is currently under construction but will coming soon.  It will give an overview of the world of scientific publishing, spanning from traditional formats, to open to access, to open, interactive, reproducible, and 'living' publications with modifiable and executable code.

 

Introduction to Neurobiology for Non-Specialists

HBP Education Programme

The field of neuroscience is one of the most interdisciplinary scientific fields. It is constantly expanded and developed further and unites researchers from a vast variety of backgrounds such as chemistry, biology, physics, medicine, or psychology. By examining the principles that influence the development and function of the human nervous system, it advances the understanding of the fundamental mechanisms of human behaviour, emotions, and thoughts, and what happens if they fail.

 

FAIR Approaches for Electrophysiology

INCF

The course provides an introduction to the growing field of electrophysiology standards, infrastructure, and initiatives. From data curation on open research infrastructures like EBRAINS, to overviews of national data analytics platforms like Australia's AEDAPT, the lessons in this course highlight already available resources for the global neuroinformatics commuity while also reinforcing the need for and importance of FAIR science principles in future research projects.

 

Model Fitting

Neuromatch Academy

Neuromatch Academy aims to introduce traditional and emerging tools of computational neuroscience to trainees.

 

International Neuroethics Society Webinar Series

International Neuroethics Society

This course consists of a series of webinars organized by the International Neuroethics Society on various neuroethics topics. 

 
INCF TrainingSpace

INCF Assembly 2023 - Lightning Talks (Day 2)

INCF

This course consists of several lightning talks from the second day of INCF's Neuroinformatics Assembly 2023. Covering a wide range of topics, these brief talks provide snapshots of various neuroinformatic efforts such as brain-computer interface standards, dealing with multimodal animal MRI datasets, distributed data management, and several more. 

 

Data Science and Reproducibility

Michel Dumontier

This brief course consists of slides on data science and reproducibility issues from lectures given at Maastricht University. 

 

Cognitive Science and Psychology: Mind, Brain, and Behavior

NeurotechEU

This lecture series is presented by NeuroTechEU, an alliance between eight European universities with the goal to build a trans-European network of excellence in brain research and technologies. By following along with this series, participants will learn about the history of cognitive science and the development of the field in a sociocultural context, as well as its trajectory into the future with the advent of artificial intelligence and neural network development.

 

CAN 2019: Science Management Symposium

Canadian Association for Neuroscience (CAN) Meeting 2019

The landscape of scientific research is changing. Today’s researchers need to participate in large-scale collaborations, obtain and manage funding, share data, publish, and undertake knowledge translation activities in order to be successful. As per these increasing demands, Science Management is now a vital piece of the environment. This course consists of lectures presenting practical techniques, tools, and project management skills that participants can begin to implement.

 
INCF TrainingSpace

INCF Assembly 2023 - Lightning Talks (Day 2)

INCF

This course consists of several lightning talks from the second day of INCF's Neuroinformatics Assembly 2023. Covering a wide range of topics, these brief talks provide snapshots of various neuroinformatic efforts such as brain-computer interface standards, dealing with multimodal animal MRI datasets, distributed data management, and several more. 

 
INCF TrainingSpace

INCF Assembly 2023 - Lightning Talks (Day 1)

INCF

This course consists of three lessons, each corresponding to a lightning talk given at the first day of INCF's Neuroinformatics Assembly 2023. By following along these brief talks, you will hear about topics such as open source tools for computer vision, tools for the integration of various MRI dataset formats, as well as international data governance. 

 

Introduction to Neurodata Without Borders (NWB) for Python Users II

NWB Core Development Team

The Neurodata Without Borders: Neurophysiology project (NWB:N, https://www.nwb.org/) is an effort to standardize the description and storage of neurophysiology data and metadata. NWB enables data sharing and reuse and reduces the energy barrier to applying data analytics both within and across labs. Several laboratories, including the Allen Institute for Brain Science, have wholeheartedly adopted NWB.

 

INCF Assembly 2022 - Day 2 Sessions

INCF

Sessions from the INCF Neuroinformatics Assembly 2022 day 2. 

VIEW THE PROGRAM

 

Open Science: Practices and Policies

These lessons give an overview of the principles underpinning the objectives, policies, and practice of Open Science, including several representative policy documents that will be increasingly relevant to neuroscience research.

 

Reproducible Science (Including Git, Docker, and Binder)

Krembil Centre for Neuroinformatics

This course consists of two workshops which focus on the need for reproducibility in science, particularly under the umbrella roadmap of FAIR scienctific principles. The tutorials also provide an introduction to some of the most commonly used open-source scientific tools, including Git, GitHub, Google Colab, Binder, Docker, and the programming languages Python and R. 

 

Conceptual Background & Refreshers

This course provides introductory and refresher lessons for a range of concepts and methods useful in the field of neuroscience and neuroinformatics.