PET-BIDS Tool Demonstrations and Tutorials: Image Analysis
PET-BIDS Tool Demonstrations and Tutorials: Image Analysis
This session dives into practical PET tooling on BIDS data—showing how to run motion correction, register PET↔MRI, extract time–activity curves, and generate standardized PET-BIDS derivatives with clear QC reports. It introduces modular BIDS Apps (head-motion correction, TAC extraction), a full pipeline (PETPrep), and a PET/MRI defacer, with guidance on parameters, outputs, provenance, and why Dockerized containers are the reliable way to run them at scale.
Topics covered in this lesson
- BIDS apps demo
- Why preprocessing matters
- Atlas and ROI choices
- Partial volume correction
- Data variability example
- PETPrep HMC usage
- QC outputs
- TAC extraction tool
- Derivatives structure
- Containers recommended
- Reference masks
- Standard spaces
External Links
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