Skip to main content

Multi-Region Trilogy Part 2: Viewing Alternate Haplotypes


This tutorial demonstrates viewing alternate haplotypes with the UCSC Genome Browser.

Topics covered in this lesson
  • Set up the Genome Browser display
  • View alternate sequences
  • Fetch sequence of right end of alt
  • Fetch sequence of left end of alt
  • Blat the alt ends
  • Substitute alt ends into chromosome
  • Track lifted from hg19 lacks hg38 annotations on alt
  • Remove alt from main chromosome
Back to the course