Multi-Region Trilogy Part 2: Viewing Alternate Haplotypes
Multi-Region Trilogy Part 2: Viewing Alternate Haplotypes
This tutorial demonstrates viewing alternate haplotypes with the UCSC Genome Browser.
Topics covered in this lesson
- Set up the Genome Browser display
- View alternate sequences
- Fetch sequence of right end of alt
- Fetch sequence of left end of alt
- Blat the alt ends
- Substitute alt ends into chromosome
- Track lifted from hg19 lacks hg38 annotations on alt
- Remove alt from main chromosome
External Links
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