Introduction to calcium imaging data
You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.
- Calcium imaging data
- Isolating cell bodies
- Principal components analysis
- Local image processing
- Isolating and filtering clusters
- Temporal filtering
Basic familiarity with MATLAB programming.