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Identifying cell bodies based on contiguity

Difficulty level

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

Topics covered in this lesson
  • Applying image processing techniques to identify cell bodies based on contiguity

Basic familiarity with MATLAB programming.

Technology requirement
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