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INCF TrainingSpace

Deep Learning: Associative Memories

NYU Center for Data Science

This module covers the concept of associative memories in deep learning. It is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Introduction to Deep Learning (module 1 of the course), Parameter Sharing (module 2 of the course), 

 

Cognitive Science and Psychology: Mind, Brain, and Behavior

NeurotechEU

This lecture series is presented by NeuroTechEU, an alliance between eight European universities with the goal to build a trans-European network of excellence in brain research and technologies. By following along with this series, participants will learn about the history of cognitive science and the development of the field in a sociocultural context, as well as its trajectory into the future with the advent of artificial intelligence and neural network development.

 

Modeling Practice

Neuromatch Academy

Neuromatch Academy aims to introduce traditional and emerging tools of computational neuroscience to trainees.

 
INCF TrainingSpace

Session 5: Infrastructure for Sensitive Data

INCF

This course consists of a three-part session from the second day of INCF's Neuroinformatics Assembly 2023. The lessons describe various on-going efforts within the fields of neuroinformatics and clinical neuroscience to adjust to the increasingly vast volumes of brain data being collected and stored.

 

INCF Short Course: Introduction to Neuroinformatics

INCF

The emergence of data-intensive science creates a demand for neuroscience educators worldwide to deliver better neuroinformatics education and training in order to raise a generation of modern neuroscientists with FAIR capabilities, awareness of the value of standards and best practices, knowledge in dealing with big datasets, and the ability to integrate knowledge over multiple scales and methods.

 

Module 4: fMRI

Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccenticity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

 

Reproducible Science (Including Git, Docker, and Binder)

Krembil Centre for Neuroinformatics

This course consists of two workshops which focus on the need for reproducibility in science, particularly under the umbrella roadmap of FAIR scienctific principles. The tutorials also provide an introduction to some of the most commonly used open-source scientific tools, including Git, GitHub, Google Colab, Binder, Docker, and the programming languages Python and R. 

 

FAIR neuroscience and EBRAINS tools for data sharing, analysis, and simulation

INCF

This workshop provides an opportunity to explore the advanced tools and techniques for data sharing, analysis, visualization, and simulation.

 

Ethics and Governance

Ethical conduct of science, good governance of data, and accelerated translation to the clinic are key to high-calibre open neuroscience.  Everyday practitioners of science must be sensitized to a range of ethical considerations in their research, some having especially to do with open data-sharing. The lessons included in this course introduce a number of these topics and end with concrete guidance for participant consent and de-identification of data.

 

INCF Assembly 2022 - Day 2 Sessions

INCF

Sessions from the INCF Neuroinformatics Assembly 2022 day 2. 

VIEW THE PROGRAM

 

Data Science and Neuroinformatics

INCF

Much like neuroinformatics, data science uses techniques from computational science to derive meaningful results from large complex datasets. In this session, we will explore the relationship between neuroinformatics and data science, by emphasizing a range of data science approaches and activities, ranging from the development and application of statistical methods, through the establishment of communities and platforms, and through the implementation of open-source software tools.

 

Conceptual Background & Refreshers

This course provides introductory and refresher lessons for a range of concepts and methods useful in the field of neuroscience and neuroinformatics. 

 

Module 4: fMRI

Mike X. Cohen

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccenticity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

 

Hypothes.is: A Web-Based Annotation Tool

Hypothes.is

This short course covers Hypothes.is, an annotation tool that enables users to collaboratively annotate course readings and other internet resources.

Features of Hypothes.is:

 
INCF TrainingSpace

Biophysical Models

INCF

This course consists of introductory lectures on different aspects of biophysical models. By following this course you will learn about various neuronal models, neuron anatomy and signaling, as well the numerous and complex cellular mechanisms underlying healthy brain function. 

 

Simulating Brain Microcircuit Activity and Signals in Mental Health

Krembil Centre for Neuroinformatics

This course offers lectures on the origin and functional significance of certain electrophysiological signals in the brain, as well as a hands-on tutorial on how to simulate, statistically evaluate, and visualize such signals. Participants will learn the simulation of signals at different spatial scales, including single-cell (neuronal spiking) and global (EEG), and how these may serve as biomarkers in the evaluation of mental health data.

 

Enabling Multi-Scale Data Integration: Turning Data to Knowledge

NFDI Neuroscience

This workshop is organized by the German National Research Data Infrastructure Initiative Neuroscience (NFDI-Neuro). The initiative is community driven and comprises around 50 contributing national partners and collaborators. NFDI-Neuro partners with EBRAINS AISB, the coordinating entity of the EU Human Brain Project and the EBRAINS infrastructure. We will introduce common methods that enable digital reproducible neuroscience.

 
INCF TrainingSpace

Session 8: FAIR Data: The Role of Journals

INCF

Most neuroscience journals request authors to make their data publicly available in appropriate repositories. The requirements and policies put forward by journals vary, and the services provided for different types of data also differ considerably across repositories.

 

Notebooks

Notebook systems are proving invaluable to skill acquisition, research documentation, publication, and reproducibility.  This series of presentations introduces the most popular platform for computational notebooks, Project Jupyter, as well as other resources like Binder and NeuroLibre. 

 
INCF TrainingSpace

Session 4: "Is This FAIR?": Transparency in EDI, Career Development, & Management

INCF

There is a growing recognition and adoption of open and FAIR science practices in neuroscience research. This is predominately regarded as scientific progress and has enabled significant opportunities for large, collaborative, team science. The efforts and practical work that go into creating an open and FAIR landscape extend far beyond just the science.