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This talk describes the NIH-funded SPARC Data Structure, and how this project navigates ontology development while keeping in mind the FAIR science principles. 

Difficulty level: Beginner
Duration: 25:44
Speaker: : Fahim Imam

This lesson provides an overview of the current status in the field of neuroscientific ontologies, presenting examples of data organization and standards, particularly from neuroimaging and electrophysiology. 

Difficulty level: Intermediate
Duration: 33:41

This lesson continues from part one of the lecture Ontologies, Databases, and Standards, diving deeper into a description of ontologies and knowledg graphs. 

Difficulty level: Intermediate
Duration: 50:18
Speaker: : Jeff Grethe
Course:

This lecture covers structured data, databases, federating neuroscience-relevant databases, and ontologies. 

Difficulty level: Beginner
Duration: 1:30:45
Speaker: : Maryann Martone

This lecture covers FAIR atlases, including their background and construction, as well as how they can be created in line with the FAIR principles.

Difficulty level: Beginner
Duration: 14:24
Speaker: : Heidi Kleven

This lecture focuses on ontologies for clinical neurosciences.

Difficulty level: Intermediate
Duration: 21:54

This is a tutorial on how to simulate neuronal spiking in brain microcircuit models, as well as how to analyze, plot, and visualize the corresponding data. 

Difficulty level: Intermediate
Duration: 1:39:50
Speaker: : Frank Mazza

This video will document the process of running an app on brainlife, from data staging to archiving of the final data outputs.

Difficulty level: Beginner
Duration: 3:43
Speaker: :

This quick video presents some of the various visualizers available on brainlife.io

Difficulty level: Beginner
Duration: 1:11
Speaker: :

This short video shows how a brainlife.io publication can be opened from the Data Deposition page of the journal Nature Scientific Data.

Difficulty level: Beginner
Duration: 2:25
Speaker: :
Course:

An introduction to data management, manipulation, visualization, and analysis for neuroscience. Students will learn scientific programming in Python, and use this to work with example data from areas such as cognitive-behavioral research, single-cell recording, EEG, and structural and functional MRI. Basic signal processing techniques including filtering are covered. The course includes a Jupyter Notebook and video tutorials.

 

Difficulty level: Beginner
Duration: 1:09:16
Speaker: : Aaron J. Newman

This lecture covers the application of diffusion MRI for clinical and preclinical studies.

Difficulty level: Beginner
Duration: 33:10
Speaker: : Silvia de Santis

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices. 

Difficulty level: Intermediate
Duration: 1:39:04