The Brain Imaging Data Structure (BIDS)

By

University of Washington eScience Institute

Difficulty level

Intermediate

Speaker

Chris Gorgolewski

Type

Duration

56:49

Topic

Standards and Best Practices

Introduction to the Brain Imaging Data Structure (BIDS): a standard for organizing human neuroimaging datasets. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Topics covered in this lesson

Challenges of data sharing in neuroimaging
What is BIDS
BIDS usage scenarios
Principles behind BIDS
Tutorial: BIDS validator
BIDS starter kit
BIDS community and adoption

External Links

Link to lecture slides

Link to BIDS Starter Kit

Link to BIDS Validator

Link to Neurohackademy

Back to the course

Lessons

1

1

Cloud computing for neuroimaging

2

1

Python packaging

3

1

Data manipulation in Python/Pandas

4

1

Reproducibility in fMRI: what is the problem?

5

1

Meta-analysis and reproducibility

6

1

Introduction to Python

7

1

The FAIR Data Principles

8

1

Collaborating with Git and GitHub

9

1

Measuring human functional brain networks

10

1

Writing the actual article: Next generation science with Jupyter

11

1

Machine learning with scikit-learn

12

1

13

2

The Brain Imaging Data Structure (BIDS)

14

2

Functional brain parcellations

15

2

From interactive exploration to reproducible data science: Jupyter, Binder, Travis, and Friends