Skip to main content

In this presentation by the OHBM OpenScienceSIG, Tom Shaw and Steffen Bollmann cover how containers can be useful for running the same software on different platforms and sharing analysis pipelines with other researchers. They demonstrate how to build docker containers from scratch, using Neurodocker, and cover how to use containers on an HPC with singularity.

 

 

Difficulty level: Beginner
Duration: 01:21:59

Serving as good refresher, Shawn Grooms explains the maths and logic concepts that are important for programmers to understand, including sets, propositional logic, conditional statements, and more.

 

This compilation is courtesy of freeCodeCamp.

Difficulty level: Beginner
Duration: 01:00:07
Speaker: :

Linear algebra is the branch of mathematics concerning linear equations such as linear functions and their representations through matrices and vector spaces. As such, it underlies a huge variety of analyses in the neurosciences.  This lesson provides a useful refresher which will facilitate the use of Matlab, Octave, and various matrix-manipulation and machine-learning software.

 

This lesson was created by RootMath.

Difficulty level: Beginner
Duration: 01:21:30
Speaker: :

This lecture discusses the the importance and need for data sharing in clinical neuroscience.

Difficulty level: Intermediate
Duration: 25:22
Speaker: : Thomas Berger

This lecture presents the Medical Informatic Platform's data federation for Traumatic Brain Injury.

Difficulty level: Intermediate
Duration: 25:55
Speaker: : Stefano Finazzi

This lecture gives insights into the Medical Informatics Platform's current and future data privacy model.

Difficulty level: Intermediate
Duration: 17:29
Speaker: : Yannis Ioannidis

This lecture explains the concept of federated analysis in the context of medical data, associated challenges. The lecture also presents an example of hospital federations via the Medical Informatics Platform.

Difficulty level: Intermediate
Duration: 19:15
Speaker: : Yannis Ioannidis

This lecture gives an overview on the European Health Dataspace. 

Difficulty level: Intermediate
Duration: 26:33

This lecture presents the Medical Informatics Platform's data federation in epilepsy.

Difficulty level: Intermediate
Duration: 27:09
Speaker: : Philippe Ryvlin

This lecture presents the Medical Informatics Platform's data federation in epilepsy.

Difficulty level: Intermediate
Duration: 26:51
Speaker: : Pawel Swieboda

This lecture focuses on how the immune system can target and attack the nervous system to produce autoimmune responses that may result in diseases such as multiple sclerosis, neuromyelitis and lupus cerebritis manifested by motor, sensory, and cognitive impairments. Despite the fact that the brain is an immune-privileged site, autoreactive lymphocytes producing proinflammatory cytokines can cause active brain inflammation, leading to myelin and axonal loss.

Difficulty level: Beginner
Duration: 37:36
Speaker: : Anat Achiron

This lecture will provide an overview of neuroimaging techniques and their clinical applications.

Difficulty level: Beginner
Duration: 45:29
Speaker: : Dafna Ben Bashat

This lecture will provide an overview of neuroimaging techniques and their clinical applications

Difficulty level: Beginner
Duration: 41:00
Speaker: : Dafna Ben Bashat

This lecture will highlight our current understanding and recent developments in the field of neurodegenerative disease research, as well as the future of diagnostics and treatment of neurodegenerative diseases

Difficulty level: Beginner
Duration: 1:02:29
Speaker: : Nir Giladi

This lecture provides an overview of depression (epidemiology and course of the disorder), clinical presentation, somatic co-morbidity, and treatment options.

Difficulty level: Beginner
Duration: 37:51

How genetics can contribute to our understanding of psychiatric phenotypes.

Difficulty level: Beginner
Duration: 55:15
Speaker: : Sven Cichon

The lecture focuses on rationale for employing neuroimaging methods for movement disorders

Difficulty level: Beginner
Duration: 1:04:04
Speaker: : Bogdan Draganski

An overview of some of the essential concepts in neuropharmacology (e.g. receptor binding, agonism, antagonism), an introduction to pharmacodynamics and pharmacokinetics, and an overview of the drug discovery process relative to diseases of the Central Nervous System.

Difficulty level: Beginner
Duration: 45:47
Course:

Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an open source framework for storing and processing behavioural, clinical, neuroimaging and genetic data. LORIS also makes it easy to manage large datasets acquired over time in a longitudinal study, or at different locations in a large multi-site study.

Difficulty level: Beginner
Duration: 0:35
Speaker: : Samir Das

DAQCORD is a framework for the design, documentation and reporting of data curation methods in order to advance the scientific rigour, reproducibility and analysis of the data. This lecture covers the rationale for developing the framework, the process in which the framework was developed, and ends with a presentation of the framework. While the driving use case for DAQCORD was clinical traumatic brain injury research, the framework is applicable to clinical studies in other domains of clinical neuroscience research.

Difficulty level: Intermediate
Duration: 17:08
Speaker: : Ari Ercole