Explore how to setup an epileptic seizure simulation with the TVB graphical user interface. This lesson will show you how to program the epileptor model in the brain network to simulate a epileptic seizure originating in the hippocampus. It will also show how to upload and view mouse connectivity data, as well as give a short introduction to the python script interface of TVB.

Learn how to simulate seizure events and epilepsy in The Virtual Brain. We will look at the paper: On the Nature of Seizure Dynamics which describes a new local model called the Epileptor, and apply this same model in The Virtual Brain. This is part 1 of 2 in a series explaining how to use the Epileptor. In this part, we focus on setting up the parameters.

The practical usage of The Virtual brain in its graphical user interface and via python scripts is introduced. In the graphical user interface, you are guided through its data repository, simulator, phase plane exploration tool, connectivity editor, stimulus generator and the provided analyses. The implemented iPython notebooks of TVB are presented, and since they are public, can be used for further exploration of The Virtual brain.

Tutorial on collaborating with Git and GitHub. This tutorial was part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Colt Steele provides a comprehensive introduction to the command line and 50 popular Linux commands.  This is a long course (nearly 5 hours) but well worth it if you are going to spend a good part of your career working from a terminal, which is likely if you are interested in flexibility, power, and reproducibility in neuroscience research.

This lesson is courtesy of freeCodeCamp.

This lecture and tutorial focuses on measuring human functional brain networks. The lecture and tutorial were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Overview of Day 2 of this course.

"Faster & more sensitive imaging with the MiniFAST" was presented by Caleb Kemere at the 2021 Virtual Miniscope Workshop as part of a series of talks by leading Miniscope users and developers.

This module covers fMRI data, including creating and interpreting flat maps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.

Running your own Minion session in the MetaCell cloud using jupityr notebooks

Mimicking a kernel crash, and walking through the steps to restore your inputs.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

This lesson will go through how to extract cells from video that has been cleaned of background noise and motion.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.