Lecture on the most important concepts in software engineering

Difficulty level: Beginner

Duration: 32:59

Speaker: : Jeff Muller

Course:

Lecture on functional brain parcellations and a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation which were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Advanced

Duration: 50:28

Speaker: : Pierre Bellec

As models in neuroscience have become increasingly complex, it has become more difficult to share all aspects of models and model analysis, hindering model accessibility and reproducibility. In this session, we will discuss existing resources for promoting FAIR data and models in computational neuroscience, their impact on the field, and the remaining barriers. This lecture covers how FAIR practices affect personalized data models, including workflows, challenges, and how to improve these practices.

Difficulty level: Beginner

Duration: 13:16

Speaker: : Kelly Shen

Much like neuroinformatics, data science uses techniques from computational science to derive meaningful results from large complex datasets. In this session, we will explore the relationship between neuroinformatics and data science, by emphasizing a range of data science approaches and activities, ranging from the development and application of statistical methods, through the establishment of communities and platforms, and through the implementation of open-source software tools. Rather than rigid distinctions, in the data science of neuroinformatics, these activities and approaches intersect and interact in dynamic ways. Together with a panel of cutting-edge neuro-data-scientist speakers, we will explore these dynamics

This lecture covers how brainlife.io works, and how it can be applied to neuroscience data.

Difficulty level: Beginner

Duration: 10:14

Speaker: : Franco Pestilli

Course:

As a part of NeuroHackademy 2020, Tara Madhyastha (University of Washington), Andrew Crabb (AWS), and Ariel Rokem (University of Washington) give a lecture on Cloud Computing, focusing on Amazon Web Services.

This video is provided by the University of Washington eScience Institute.

Difficulty level: Beginner

Duration: 01:43:59

Speaker: :

Course:

Shawn Brown presents an overview of CBRAIN, a web-based platform that allows neuroscientists to perform computationally intensive data analyses by connecting them to high-performance-computing facilities across Canada and around the world.

This talk was given in the context of a Ludmer Centre event in 2019.

Difficulty level: Beginner

Duration: 56:07

Speaker: :

This lecture covers an introduction to neuroinformatics and its subfields, the content of the short course and future neuroinformatics applications.

Difficulty level: Beginner

Duration: 34:27

Speaker: : Marja-Leena Linne

Course:

In this presentation by the OHBM OpenScienceSIG, Tom Shaw and Steffen Bollmann cover how containers can be useful for running the same software on different platforms and sharing analysis pipelines with other researchers. They demonstrate how to build docker containers from scratch, using Neurodocker, and cover how to use containers on an HPC with singularity.

Difficulty level: Beginner

Duration: 01:21:59

Speaker: : Tom Shaw & Steffen Bollmann

Course:

Introduction to the Mathematics chapter of Datalabcc's "Foundations in Data Science" series.

Difficulty level: Beginner

Duration: 2:53

Speaker: : Barton Poulson

Course:

Primer on elementary algebra

Difficulty level: Beginner

Duration: 3:03

Speaker: : Barton Poulson

Course:

Primer on systems of linear equations

Difficulty level: Beginner

Duration: 5:24

Speaker: : Barton Poulson

Course:

How calculus relates to optimization

Difficulty level: Beginner

Duration: 8:43

Speaker: : Barton Poulson

Serving as good refresher, Shawn Grooms explains the maths and logic concepts that are important for programmers to understand, including sets, propositional logic, conditional statements, and more.

This compilation is courtesy of freeCodeCamp.

Difficulty level: Beginner

Duration: 01:00:07

Speaker: :

Linear algebra is the branch of mathematics concerning linear equations such as linear functions and their representations through matrices and vector spaces. As such, it underlies a huge variety of analyses in the neurosciences. This lesson provides a useful refresher which will facilitate the use of Matlab, Octave, and various matrix-manipulation and machine-learning software.

This lesson was created by RootMath.

Difficulty level: Beginner

Duration: 01:21:30

Speaker: :

This lecture provides an overview of depression (epidemiology and course of the disorder), clinical presentation, somatic co-morbidity, and treatment options.

Difficulty level: Beginner

Duration: 37:51

Speaker: : Barbara Sperner-Unterweger

Part 1 of 2 of a tutorial on statistical models for neural data

Difficulty level: Beginner

Duration: 1:45:48

Speaker: : Jonathan Pillow

- Artificial Intelligence (1)
- protein-protein interactions (1)
- Extracellular signaling (1)
- Animal models (1)
- Assembly 2021 (29)
- Brain-hardware interfaces (13)
- Clinical neuroscience (14)
- International Brain Initiative (2)
- Repositories and science gateways (5)
- Resources (4)
- General neuroscience
(29)
- (-) Neuroscience (7)
- Cell signaling (3)
- Brain networks (2)
- Glia (1)
- Electrophysiology (19)
- Learning and memory (1)
- Neuroanatomy (14)
- Neurobiology (6)
- Neurodegeneration (1)
- Neuroimmunology (1)
- Neural networks (2)
- Neurophysiology (21)
- Neuropharmacology (2)
- (-) Synaptic plasticity (2)
- Visual system (12)

- Phenome (1)
- (-)
General neuroinformatics
(2)
- Computational neuroscience (195)
- Computer Science (15)
- Genomics (26)
- (-) Data science (19)
- (-) Open science (35)
- Project management (7)
- Education (2)
- Publishing (1)
- Neuroethics (31)