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Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). Here, the HED Working Group presents an online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 

     

    Difficulty level: Beginner
    Duration: 03:37:42
    Speaker: :

    This lesson gives a description of the BrainHealth Databank, a repository of many types of health-related data, whose aim is to accelerate research, improve care, and to help better understand and diagnose mental illness, as well as develop new treatments and prevention strategies. 

     

    This lesson corresponds to slides 46-78 of the PDF below. 

    Difficulty level: Beginner
    Duration: 1:12:25
    Speaker: : Joanna Yu

    This talk goes over Neurobagel, an open-source platform developed for improved dataset sharing and searching. 

    Difficulty level: Beginner
    Duration: 13:37

    This lightning talk describes the heterogeneity of the MR field regarding types of scanners, data formats, protocols, and software/hardware versions, as well as the challenges and opportunities for unifying these datasets in a common interface, MRdataset.

    Difficulty level: Beginner
    Duration: 5:15
    Speaker: : Harsh Sinha

    This lightning talk gives an outline of the DataLad ecosystem for large-scale collaborations, and how DataLad addresses challenges that may arise in such research cooperations.

    Difficulty level: Beginner
    Duration: 2:54

    In this lightning talk, you will learn about BrainGlobe, an initiative which exists to facilitate the development of interoperable Python-based tools for computational neuroanatomy.

    Difficulty level: Beginner
    Duration: 3:33

    This is the second of three lectures around current challenges and opportunities facing neuroinformatic infrastructure for handling sensitive data. 

    Difficulty level: Beginner
    Duration: 48:26
    Speaker: : Michael Schirner

    This lesson provides an overview of how to conceptualize, design, implement, and maintain neuroscientific pipelines in via the cloud-based computational reproducibility platform Code Ocean. 

    Difficulty level: Beginner
    Duration: 17:01
    Speaker: : David Feng

    This lesson provides an overview of how to construct computational pipelines for neurophysiological data using DataJoint.

    Difficulty level: Beginner
    Duration: 17:37
    Speaker: : Dimitri Yatsenko

    This hands-on tutorial walks you through DataJoint platform, highlighting features and schema which can be used to build robost neuroscientific pipelines. 

    Difficulty level: Beginner
    Duration: 26:06
    Speaker: : Milagros Marin

    This lesson provides an introduction to the DataLad, a free and open source distributed data management system that keeps track of your data, creates structure, ensures reproducibility, supports collaboration, and integrates with widely used data infrastructure.

    Difficulty level: Beginner
    Duration: 22:56

    This lesson introduces several open science tools like Docker and Apptainer which can be used to develop portable and reproducible software environments. 

    Difficulty level: Beginner
    Duration: 17:22
    Speaker: : Joanes Grandjean

    This lecture provides a detailed description of how to incorporate HED annotation into your neuroimaging data pipeline. 

    Difficulty level: Beginner
    Duration: 33:36
    Speaker: : Dung Truong

    This talk provides an overview of the FAIR-aligned efforts of MATLAB and MathWorks, from the technological building blocks to the open science coordination involved in facilitating greater transparency and efficiency in neuroscience and neuroinformatics. 

    Difficulty level: Beginner
    Duration: 15:41
    Speaker: : Vijay Iyer

    In this lesson, you will learn how to understand data management plans and why data sharing is important. 

    Difficulty level: Beginner
    Duration: 44:24
    Speaker: : Jenny Muilenburg

    This lecture covers a wide range of aspects regarding neuroinformatics and data governance, describing both their historical developments and current trajectories. Particular tools, platforms, and standards to make your research more FAIR are also discussed.

    Difficulty level: Beginner
    Duration: 54:58
    Speaker: : Franco Pestilli

    This brief video provides an introduction to brainlife.io, a free cloud computing platform for neuroimaging data analysis. 

    Difficulty level: Beginner
    Duration: 2:41
    Speaker: :

    This video will document the process of uploading data into a brainlife project using ezBIDS.

    Difficulty level: Beginner
    Duration: 6:15
    Speaker: :

    This lesson provides a brief visual walkthrough on the necessary steps when copying data from one brainlife project to another. 

    Difficulty level: Beginner
    Duration: 1:07
    Speaker: :

    This brief video walks you through the steps necessary when creating a project on brainlife.io. 

    Difficulty level: Beginner
    Duration: 1:45
    Speaker: :