This lecture on generating TVB ready imaging data by Paul Triebkorn is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.
The course is an introduction to the field of electrophysiology standards, infrastructure, and initiatives. This lecture contains an overview of the Australian Electrophysiology Data Analytics Platform (AEDAPT), how it works, how to scale it, and how it fits into the FAIR ecosystem.
As researchers develop new non-invasive direct-to-consumer technologies that read and stimulate the brain, society must consider the appropriate uses of such devices. Will these brain technologies eventually allow enhancement of abilities beyond human capabilities? In what settings are people using these devices outside the purview of researchers or clinicians? Should consumers be allowed to ‘hack’ their own brain in order to improve performance?
To explore these challenges and the ethical issues raised by advances in do-it-yourself (DIY) neurotechnology, the Emerging Issues Task Force of the International Neuroethics Society organized a virtual panel discussion. The panel discussed neurotechnologies such as transcranial direct current stimulation (tDCS) and electroencephalogram (EEG) headsets and their ability to change the way we understand and alter our brains. Particular attention will be given to the use of neurotechnology by everyday people and the implications this has for regulatory oversight and citizen neuroscience.
This module covers many of the types of non-invasive neurotech and neuroimaging devices including Electroencephalography (EEG), Electromyography (EMG), Electroneurography (ENG), Magnetoencephalography (MEG), functional Near-Infrared Spectroscopy (fNRIs), Magnetic Resonance Imaging (MRI), Positron Emission Tomography (PET), and Computed Tomography
An introduction to data management, manipulation, visualization, and analysis for neuroscience. Students will learn scientific programming in Python, and use this to work with example data from areas such as cognitive-behavioral research, single-cell recording, EEG, and structural and functional MRI. Basic signal processing techniques including filtering are covered. The course includes a Jupyter Notebook and video tutorials.
Hierarchical Event Descriptors (HED) fill a major gap in the neuroinformatics standards toolkit, namely the specification of the nature(s) of events and time-limited conditions recorded as having occurred during time series recordings (EEG, MEG, iEEG, fMRI, etc.). We, the HED Working Group, propose a half-day online INCF workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis.
This lecture introduces you to the basics of the Amazon Web Services public cloud. It covers the fundamentals of cloud computing and go through both motivation and process involved in moving your research computing to the cloud. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.
As models in neuroscience have become increasingly complex, it has become more difficult to share all aspects of models and model analysis, hindering model accessibility and reproducibility. In this session, we will discuss existing resources for promoting FAIR data and models in computational neuroscience, their impact on the field, and the remaining barriers. This lecture covers how FAIR practices affect personalized data models, including workflows, challenges, and how to improve these practices.
Much like neuroinformatics, data science uses techniques from computational science to derive meaningful results from large complex datasets. In this session, we will explore the relationship between neuroinformatics and data science, by emphasizing a range of data science approaches and activities, ranging from the development and application of statistical methods, through the establishment of communities and platforms, and through the implementation of open-source software tools. Rather than rigid distinctions, in the data science of neuroinformatics, these activities and approaches intersect and interact in dynamic ways. Together with a panel of cutting-edge neuro-data-scientist speakers, we will explore these dynamics
This lecture covers how brainlife.io works, and how it can be applied to neuroscience data.
As a part of NeuroHackademy 2020, Tara Madhyastha (University of Washington), Andrew Crabb (AWS), and Ariel Rokem (University of Washington) give a lecture on Cloud Computing, focusing on Amazon Web Services.
This video is provided by the University of Washington eScience Institute.
Overview of the content for Day 1 of this course.
Overview of Day 2 of this course.
Best practices: the tips and tricks on how to get your Miniscope to work and how to get your experiments off the ground.
"Faster & more sensitive imaging with the MiniFAST" was presented by Caleb Kemere at the 2021 Virtual Miniscope Workshop as part of a series of talks by leading Miniscope users and developers.
"Balancing size & function in compact miniscopes" was presented by Tycho Hoogland at the 2021 Virtual Miniscope Workshop as part of a series of talks by leading Miniscope users and developers.
"Computational imaging for miniature miniscopes" was presented by Laura Waller at the 2021 Virtual Miniscope Workshop as part of a series of talks by leading Miniscope users and developers.
This module covers fMRI data, including creating and interpreting flat maps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.
This module covers fMRI data, including creating and interpreting flatmaps, exploring variability and average responses, and visual eccentricity. You will learn about processing BOLD signals, trial-averaging, and t-tests. The MATLAB code introduces data animations, multicolor visualizations, and linear indexing.
"Online 1-photon vs 2-photon calcium imaging data analysis: Current developments and future plans" was presented by Andrea Giovannucci at the 2021 Virtual Miniscope Workshop as part of a series of talks by leading Miniscope users and developers.