This lesson continues with the second workshop on reproducible science, focusing on additional open source tools for researchers and data scientists, such as the R programming language for data science, as well as associated tools like RStudio and R Markdown. Additionally, users are introduced to Python and iPython notebooks, Google Colab, and are given hands-on tutorials on how to create a Binder environment, as well as various containers in Docker and Singularity.

In this lesson, while learning about the need for increased large-scale collaborative science that is transparent in nature, users also are given a tutorial on using Synapse for facilitating reusable and reproducible research. 

This is a tutorial introducing participants to the basics of RNA-sequencing data and how to analyze its features using Seurat. 

Following the previous lesson on neuronal structure, this lesson discusses neuronal function, particularly focusing on spike triggering and propogation. 

This talk highlights a set of platform technologies, software, and data collections that close and shorten the feedback cycle in research. 

This lesson describes the Neuroscience Gateway , which facilitates access and use of National Science Foundation High Performance Computing resources by neuroscientists.

In this lecture, attendees will learn how Mutant Mouse Resource and Research Center (MMRRC) archives, cryopreserves, and distributes scientifically valuable genetically engineered mouse strains and mouse ES cell lines for the genetics and biomedical research community.

This demonstration walks through how to import your data into MATLAB.

This lesson provides instruction regarding the various factors one must consider when preprocessing data, preparing it for statistical exploration and analyses. 

This tutorial outlines, step by step, how to perform analysis by group and how to do change-point detection.

This tutorial walks through several common methods for visualizing your data in different ways depending on your data type.

This tutorial illustrates several ways to approach predictive modeling and machine learning with MATLAB.

This brief tutorial goes over how you can easily work with big data as you would with any size of data.

In this tutorial, you will learn how to deploy your models outside of your local MATLAB environment, enabling wider sharing and collaboration.

The lecture provides an overview of the core skills and practical solutions required to practice reproducible research.

This tutorial teaches users how to use Pandas objects to help store and manipulate various datasets in Python. 

This lesson gives an overview of the Brainstorm package for analyzing extracellular electrophysiology, including preprocessing, spike sorting, trial alignment, and spectrotemporal decomposition.

This lesson provides an overview of the CaImAn package, as well as a demonstration of usage with NWB.

This lesson gives an overview of the SpikeInterface package, including demonstration of data loading, preprocessing, spike sorting, and comparison of spike sorters.

In this lesson, users will learn about the NWBWidgets package, including coverage of different data types, and information for building custom widgets within this framework.