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Lecture title:

This tutorial describes the dbSNP resources in the UCSC Genome Browser, including display conventions and the subdivision of the data into several useful subset tracks, especially the Common SNPs. There is also a discussion about changes to the genome assemblies from one version to another, and of two ways to navigate between different assemblies of the human genome in the Browser.

Difficulty level: Beginner
Duration: 17:41
Lecture title:

This tutorial demonstrates the Data Integrator, a tool that allows combination and intersection of data from up to five primary tables. In the example, data are extracted showing SNPs, genes and phenotypes from a genomic region.

Difficulty level: Beginner
Duration: 6:24
Lecture title:

This tutorial shows how to obtain coordinates of genes, then input those coordinates into the Genome Browser for display. The regions do not have to be continuous in the genome.

Difficulty level: Beginner
Duration: 9:04
Lecture title:

This tutorial demonstrates the Multi-Region exon-only display mode of the UCSC Genome Browser.

Difficulty level: Beginner
Duration: 5:15
Lecture title:

This tutorial demonstrates viewing alternate haplotypes with the UCSC Genome Browser.

Difficulty level: Beginner
Duration: 7:04
Lecture title:
Difficulty level: Beginner
Duration: 4:16
Lecture title:
Difficulty level: Beginner
Duration: 3:18
Lecture title:

This tutorial demonstrates how to get the coordinates and sequences of exons using the UCSC Genome Browser.

Difficulty level: Beginner
Duration: 8:11
Lecture title:

This tutorial will demonstrate how to locate amino acid numbers for coding genes using the UCSC Genome Browser.

Difficulty level: Beginner
Duration: 8:01
Lecture title:

This tutorial will demonstrate how to find the tables in the UCSC database that are associated with the data tracks in the Genome Browser graphical viewer.

Difficulty level: Beginner
Duration: 8:39
Lecture title:

This tutorial shows how to navigate between exons of a gene using the UCSC Genome Browser.

Difficulty level: Beginner
Duration: 4:24
Lecture title:

Tutorial on collaborating with Git and GitHub. This tutorial was part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 2:15:50
Speaker: : Elizabeth DuPre
Lecture title:

Next generation science with Jupyter. This lecture was part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 50:28
Speaker: : Elizabeth DuPre
Lecture title:

Introduction to reproducible research. The lecture provides an overview of the core skills and practical solutions required to practice reproducible research. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Beginner
Duration: 1:25:17
Speaker: : Fernando Perez