This lesson provides an overview of the database of Genotypes and Phenotypes (dbGaP), which was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in humans.

This lesson introduces some practical exercises which accompany the Synapses and Networks portion of this Neuroscience for Machine Learners course. 

This lesson gives an introduction to the central concepts of machine learning, and how they can be applied in Python using the scikit-learn package. 

This lesson provides an overview of self-supervision as it relates to neural data tasks and the Mine Your Own vieW (MYOW) approach.

As a part of NeuroHackademy 2020, Elizabeth DuPre gives a lecture on "Nilearn", a python package that provides flexible statistical and machine-learning tools for brain volumes by leveraging the scikit-learn Python toolbox for multivariate statistics.  This includes predictive modelling, classification, decoding, and connectivity analysis.

This video is courtesy of the University of Washington eScience Institute.

This lesson from freeCodeCamp introduces Scikit-learn, the most widely used machine learning Python library.

This lecture covers a wide range of aspects regarding neuroinformatics and data governance, describing both their historical developments and current trajectories. Particular tools, platforms, and standards to make your research more FAIR are also discussed.

This lecture goes into detailed description of how to process workflows in the virtual research environment (VRE), including approaches for standardization, metadata, containerization, and constructing and maintaining scientific pipelines. 

This lesson provides an overview of how to conceptualize, design, implement, and maintain neuroscientific pipelines in via the cloud-based computational reproducibility platform Code Ocean. 

This lesson provides an overview of how to construct computational pipelines for neurophysiological data using DataJoint.

This talk describes approaches to maintaining integrated workflows and data management schema, taking advantage of the many open source, collaborative platforms already existing.

This hands-on tutorial walks you through DataJoint platform, highlighting features and schema which can be used to build robost neuroscientific pipelines. 

In this third and final hands-on tutorial from the Research Workflows for Collaborative Neuroscience workshop, you will learn about workflow orchestration using open source tools like DataJoint and Flyte. 

This lecture provides a detailed description of how to incorporate HED annotation into your neuroimaging data pipeline. 

This lecture describes how to build research workflows, including a demonstrate using DataJoint Elements to build data pipelines.

This lecture covers how to make modeling workflows FAIR by working through a practical example, dissecting the steps within the workflow, and detailing the tools and resources used at each step.

This is a tutorial on designing a Bayesian inference model to map belief trajectories, with emphasis on gaining familiarity with Hierarchical Gaussian Filters (HGFs).

This lesson corresponds to slides 65-90 of the PDF below. 

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices. 

This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics. 

In this workshop talk, you will receive a tour of the Code Ocean ScienceOps Platform, a centralized cloud workspace for all teams.