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Explore how to setup an epileptic seizure simulation with the TVB graphical user interface. This lesson will show you how to program the epileptor model in the brain network to simulate a epileptic seizure originating in the hippocampus. It will also show how to upload and view mouse connectivity data, as well as give a short introduction to the python script interface of TVB.

Difficulty level: Intermediate
Duration: 58:06
Speaker: : Paul Triebkorn

Learn how to simulate seizure events and epilepsy in The Virtual Brain. We will look at the paper: On the Nature of Seizure Dynamics which describes a new local model called the Epileptor, and apply this same model in The Virtual Brain. This is part 1 of 2 in a series explaining how to use the Epileptor. In this part, we focus on setting up the parameters.

Difficulty level: Beginner
Duration: 4:44
Speaker: : Paul Triebkorn

This lecture introduces you to the basics of the Amazon Web Services public cloud. It covers the fundamentals of cloud computing and go through both motivation and process involved in moving your research computing to the cloud. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 3:09:12
Speaker: : Amanda Tan
Course:

Watch this video recap of a QBIN SciComm seminar that took place over Zoom on April 26, 2021. Nikola Stikov talks about the history and future of academic publishing and the need for transparency, and Agah Karakuzu gives a live demo of an alpha version of NeuroLibre, a preprint server that goes beyond the PDF to complement research articles.

Difficulty level: Beginner
Duration: 00:53:35
Speaker: :

Learn how to create a standard extracellular electrophysiology dataset in NWB using Python

Difficulty level: Intermediate
Duration: 23:10
Speaker: : Ryan Ly

Learn how to create a standard calcium imaging dataset in NWB using Python

Difficulty level: Intermediate
Duration: 31:04
Speaker: : Ryan Ly

Learn how to create a standard intracellular electrophysiology dataset in NWB

Difficulty level: Intermediate
Duration: 20:23
Speaker: : Pamela Baker

Learn how to create a standard intracellular electrophysiology dataset in NWB

Difficulty level: Intermediate
Duration: 20:22
Speaker: : Pamela Baker

Overview of the Braintorm package for analyzing extracellular electrophysiology, including preprocessing, spike sorting, trial alignment, and spectrotemporal decomposition

Difficulty level: Intermediate
Duration: 47:47

Overview of the CaImAn package, and demonstration of usage with NWB

Difficulty level: Intermediate
Duration: 44:37

Overview of the SpikeInterface package, including demonstration of data loading, preprocessing, spike sorting, and comparison of spike sorters

Difficulty level: Intermediate
Duration: 1:10:28
Speaker: : Alessio Buccino

Overview of the NWBWidgets package, including coverage of different data types, and information for building custom widgets within this framework

Difficulty level: Intermediate
Duration: 47:15
Speaker: : Ben Dichter

Since their introduction in 2016, the FAIR data principles have gained increasing recognition and adoption in global neuroscience.  FAIR defines a set of high level principles and practices for making digital objects, including data, software and workflows, Findable, Accessible,  Interoperable and Reusable.  But FAIR is not a specification;  it leaves many of the specifics up to individual scientific disciplines to define.  INCF has been leading the way in promoting, defining and implementing FAIR data practices for neuroscience.  We have been bringing together researchers, infrastructure providers, industry and publishers through our programs and networks.  In this session, we will hear some perspectives on FAIR neuroscience from some of these stakeholders who have been working to develop and use FAIR tools for neuroscience.  We will engage in a discussion on questions such as:  how is neuroscience doing with respect to FAIR?  What have been successes?  What is currently very difficult? Where does neuroscience need to go?

 

This lecture will provide an overview of the INCF Training Suite, a collection of tools that embraces the FAIR principles developed by members of the INCF Community. This will include an overview of TrainingSpace, Neurostars, and KnowledgeSpace.

Difficulty level: Beginner
Duration: 09:50
Speaker: : Mathew Abrams

A short reel on who we are, what we're doing and why we're doing it

Difficulty level: Beginner
Duration: 2:38
Speaker: :

In this webinar, educators currently implementing collaborative annotation in their classrooms discuss their experiences with collaborative annotation and using Hythothes.is and Canvas App.

Difficulty level: Beginner
Duration: 53:14
Speaker: : Jeremy Dean

Tutorial that provides an overview of how to use the feature of Hypothes.is.

Difficulty level: Beginner
Duration: 09:30
Speaker: :

A brief overview of the Hypothesis functionality from an end user's perspective.

Difficulty level: Beginner
Duration: 5:36
Speaker: : Heather Staines

This video will teach you the basics of navigating the OSF, a free research management tool, and creating your first projects.

Difficulty level: Beginner
Duration: 2:11
Speaker: :

This webinar walks you through the basics of creating an OSF project, structuring it to fit your research needs, adding collaborators, and tying your favorite online tools into your project structure.

Difficulty level: Beginner
Duration: 55:02
Speaker: : Ian Sullivan

This webinar will introduce how to use the Open Science Framework (OSF; https://osf.io) in a Classroom. The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github and Mendeley, to streamline workflows and increase efficiency.

Difficulty level: Beginner
Duration: 32:01