You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

You will learn about working with calcium imaging data, including image processing to remove background "blur," identifying cells based on thresholded spatial contiguity, time series filtering, and principal components analysis (PCA). The MATLAB code shows data animations, capabilities of the image processing toolbox, and PCA.

This lesson contains both a lecture and a tutorial component. The lecture (0:00-20:03 of YouTube video) discusses both the need for intersectional approaches in healthcare as well as the impact of neglecting intersectionality in patient populations. The lecture is followed by a practical tutorial in both Python and R on how to assess intersectional bias in datasets. Links to relevant code and data are found below. 

This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics. 

This is a tutorial on using the open-source software PRSice to calculate a set of polygenic risk scores (PRS) for a study sample. Users will also learn how to read PRS into R, visualize distributions, and perform basic association analyses. 

This is an in-depth guide on EEG signals and their interaction within brain microcircuits. Participants are also shown techniques and software for simulating, analyzing, and visualizing these signals.

In this tutorial on simulating whole-brain activity using Python, participants can follow along using corresponding code and repositories, learning the basics of neural oscillatory dynamics, evoked responses and EEG signals, ultimately leading to the design of a network model of whole-brain anatomical connectivity. 

This tutorial walks participants through the application of dynamic causal modelling (DCM) to fMRI data using MATLAB. Participants are also shown various forms of DCM, how to generate and specify different models, and how to fit them to simulated neural and BOLD data.

This lesson corresponds to slides 158-187 of the PDF below. 

This lecture and tutorial focuses on measuring human functional brain networks. The lecture and tutorial were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.