This hands-on tutorial walks you through DataJoint platform, highlighting features and schema which can be used to build robost neuroscientific pipelines. 

This tutorial provides instruction on how to simulate brain tumors with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls.

The tutorial on modelling strokes in TVB includes a didactic video and jupyter notebooks (reproducing publication: Falcon et al. 2016 eNeuro).

This lecture covers concepts associated with neural nets, including rotation and squashing, and is a part of the Deep Learning Course at New York University's Center for Data Science (CDS).

This lecture covers the concept of neural nets training (tools, classification with neural nets, and PyTorch implementation) and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture discusses the concept of natural signals properties and the convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.

This lecture covers the concept of recurrent neural networks: vanilla and gated (LSTM) and is a part of the Deep Learning Course at NYU's Center for Data Science.

This tutorial covers LV-EBM to target prop to (vanilla, denoising, contractive, variational) autoencoder and is a part of the Advanced Energy-Based Models module of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, Energy-Based Models III, Energy-Based Models IV, and an Introduction to Data Science or a Graduate Level Machine Learning course.

This tutorial covers the concepts of autoencoders, denoising encoders, and variational autoencoders (VAE) with PyTorch, as well as generative adversarial networks and code. It is a part of the Advanced energy based models modules of the the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this course include: Energy-Based Models I, Energy-Based Models II, Energy-Based Models III, Energy-Based Models IV, Energy-Based Models V, and an Introduction to Data Science or a Graduate Level Machine Learning course.

This tutorial covers advanced concept of energy-based models. The lecture is a part of the Associative Memories module of the the Deep Learning Course at NYU's Center for Data Science. 

This tutuorial covers the concept of graph convolutional networks and is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Modules 1 - 5 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

This lecture covers the concepts of emulation of kinematics from observations and training a policy. It is a part of the Deep Learning Course at NYU's Center for Data Science. Prerequisites for this module include: Models 1-6 of this course and an Introduction to Data Science or a Graduate Level Machine Learning course.

As a part of NeuroHackademy 2021, Noah Benson gives an introduction to Pytorch, one of the two most common software packages for deep learning applications to the neurosciences.

In this hands-on tutorial, Dr. Robert Guangyu Yang works through a number of coding exercises to see how RNNs can be easily used to study cognitive neuroscience questions, with a quick demonstration of how we can train and analyze RNNs on various cognitive neuroscience tasks. Familiarity of Python and basic knowledge of Pytorch are assumed.

This is a tutorial on designing a Bayesian inference model to map belief trajectories, with emphasis on gaining familiarity with Hierarchical Gaussian Filters (HGFs).

This lesson corresponds to slides 65-90 of the PDF below. 

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices. 

This is the first of two workshops on reproducibility in science, during which participants are introduced to concepts of FAIR and open science. After discussing the definition of and need for FAIR science, participants are walked through tutorials on installing and using Github and Docker, the powerful, open-source tools for versioning and publishing code and software, respectively.

This lesson contains both a lecture and a tutorial component. The lecture (0:00-20:03 of YouTube video) discusses both the need for intersectional approaches in healthcare as well as the impact of neglecting intersectionality in patient populations. The lecture is followed by a practical tutorial in both Python and R on how to assess intersectional bias in datasets. Links to relevant code and data are found below. 

This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics. 

This is a tutorial on using the open-source software PRSice to calculate a set of polygenic risk scores (PRS) for a study sample. Users will also learn how to read PRS into R, visualize distributions, and perform basic association analyses.