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The simulation of the virtual epileptic patient is presented as an example of advanced brain simulation as a translational approach to deliver improved results in clinics. The fundamentals of epilepsy are explained. On this basis, the concept of epilepsy simulation is developed. By using an iPython notebook, the detailed process of this approach is explained step by step. In the end, you are able to perform simple epilepsy simulations your own.

Difficulty level: Beginner
Duration: 1:28:53
Speaker: : Julie Courtiol

A brief overview of the Python programming language, with an emphasis on tools relevant to data scientists. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Beginner
Duration: 1:16:36
Speaker: : Tal Yarkoni

Introduction to the FAIR Principles and examples of applications of the FAIR Principles in neuroscience. This lecture was part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Beginner
Duration: 55:57

Next generation science with Jupyter. This lecture was part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 50:28
Speaker: : Elizabeth DuPre

Introduction to reproducible research. The lecture provides an overview of the core skills and practical solutions required to practice reproducible research. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Beginner
Duration: 1:25:17
Speaker: : Fernando Perez

Learn how to create a standard extracellular electrophysiology dataset in NWB using Python

Difficulty level: Intermediate
Duration: 45:46
Speaker: : Ryan Ly

Learn how to create a standard calcium imaging dataset in NWB using Python

Difficulty level: Intermediate
Duration: 31:04
Speaker: : Ryan Ly

Learn how to create a standard intracellular electrophysiology dataset in NWB

Difficulty level: Intermediate
Duration: 20:23
Speaker: : Pamela Baker

Learn how to use the icephys-metadata extension to enter meta-data detailing your experimental paradigm

Difficulty level: Intermediate
Duration: 27:18
Speaker: : Oliver Ruebel

Learn how to build and share extensions in NWB

Difficulty level: Advanced
Duration: 20:29
Speaker: : Ryan Ly

Learn how to build custom APIs for extension

Difficulty level: Advanced
Duration: 25:40
Speaker: : Andrew Tritt

Learn how to handle writing very large data in PyNWB

Difficulty level: Advanced
Duration: 26:50
Speaker: : Andrew Tritt

Learn how to create a standard extracellular electrophysiology dataset in NWB using MATLAB

Difficulty level: Intermediate
Duration: 45:46
Speaker: : Ben Dichter

Learn how to create a standard calcium imaging dataset in NWB using MATLAB

Difficulty level: Intermediate
Duration: 39:10
Speaker: : Ben Dichter

Learn how to create a standard intracellular electrophysiology dataset in NWB

Difficulty level: Intermediate
Duration: 20:22
Speaker: : Pamela Baker

Learn how to handle writing very large data in MatNWB

Difficulty level: Advanced
Duration: 16:18
Speaker: : Ben Dichter

Overview of the Braintorm package for analyzing extracellular electrophysiology, including preprocessing, spike sorting, trial alignment, and spectrotemporal decomposition

Difficulty level: Intermediate
Duration: 47:47

Overview of the CaImAn package, and demonstration of usage with NWB

Difficulty level: Intermediate
Duration: 44:37

Overview of the SpikeInterface package, including demonstration of data loading, preprocessing, spike sorting, and comparison of spike sorters

Difficulty level: Intermediate
Duration: 1:10:28
Speaker: : Alessio Buccino

Overview of the NWBWidgets package, including coverage of different data types, and information for building custom widgets within this framework

Difficulty level: Intermediate
Duration: 47:15
Speaker: : Ben Dichter