Manipulate the default connectome provided with TVB to see how structural lesions effect brain dynamics. In this hands-on session you will insert lesions into the connectome within the TVB graphical user interface. Afterwards the modified connectome will be used for simulations and the resulting activity will be analysed using functional connectivity.
A brief overview of the Python programming language, with an emphasis on tools relevant to data scientists. This lecture was part of the 2018 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.
NWB: An ecosystem for neurophysiology data standardization
Learn how to create a standard extracellular electrophysiology dataset in NWB using Python
Learn how to create a standard calcium imaging dataset in NWB using Python
Learn how to create a standard intracellular electrophysiology dataset in NWB
Learn how to use the icephys-metadata extension to enter meta-data detailing your experimental paradigm
Learn how to build and share extensions in NWB
Learn how to build custom APIs for extension
Learn how to handle writing very large data in PyNWB
Learn how to create a standard extracellular electrophysiology dataset in NWB using MATLAB