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This video will document the process of running an app on brainlife, from data staging to archiving of the final data outputs.

Difficulty level: Beginner
Duration: 3:43
Speaker: :

This video will document the process of visualizing the provenance of each step performed to generate a data object on brainlife.

Difficulty level: Beginner
Duration: 0:21
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This video will document the process of downloading and running the "reproduce.sh" script, which will automatically run all of the steps to generate a data object locally on a user's machine.

Difficulty level: Beginner
Duration: 3:44
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This video will document the process of creating a pipeline rule for batch processing on brainlife.

Difficulty level: Intermediate
Duration: 0:57
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This video will document the process of launching a Jupyter Notebook for group-level analyses directly from brainlife.

Difficulty level: Intermediate
Duration: 0:53
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This brief video walks you through the steps necessary when creating a project on brainlife.io. 

Difficulty level: Beginner
Duration: 1:45
Speaker: :

This brief video rus through how to make an accout on brainlife.io.

Difficulty level: Beginner
Duration: 0:30
Speaker: :

This video will document how to run a correlation analysis between the gray matter volume of two different structures using the output from brainlife app-freesurfer-stats.

Difficulty level: Beginner
Duration: 1:33
Speaker: :

This lecture introduces you to the basics of the Amazon Web Services public cloud. It covers the fundamentals of cloud computing and goes through both the motivations and processes involved in moving your research computing to the cloud.

Difficulty level: Intermediate
Duration: 3:09:12

As a part of NeuroHackademy 2020, this lecture delves into cloud computing, focusing on Amazon Web Services. 

Difficulty level: Beginner
Duration: 01:43:59

Overview of Day 2 of this course.

Difficulty level: Beginner
Duration: 00:03:28
Speaker: : Tristan Shuman

This talk compares various sensors and resolutions for in vivo neural recordings.

Difficulty level: Beginner
Duration: 00:24:03

This hands-on tutorial explains how to run your own Minion session in the MetaCell cloud using jupityr notebooks.

Difficulty level: Beginner
Duration: 01:28:03

In this hands-on analysis tutorial, users will mimic a kernel crash and learn the steps to restore inputs in such a case.

Difficulty level: Beginner
Duration: 00:20:34
Speaker: : Phil Dong

This lesson will go through how to extract cells from video that has been cleaned of background noise and motion.

Difficulty level: Beginner
Duration: 01:49:40
Speaker: : Phil Dong

This final hands-on analysis tutorial walks users through the last visualization steps in the cellular data.

Difficulty level: Beginner
Duration: 00:27:23
Speaker: : Phil Dong

This lecture covers infrared LED oblique illumination for studying neuronal circuits in in vitro block-preparations of the spinal cord and brain stem.

Difficulty level: Beginner
Duration: 25:16
Speaker: : Péter Szucs

This lecture covers the application of diffusion MRI for clinical and preclinical studies.

Difficulty level: Beginner
Duration: 33:10
Speaker: : Silvia de Santis

This lesson describes the principles underlying functional magnetic resonance imaging (fMRI), diffusion-weighted imaging (DWI), tractography, and parcellation. These tools and concepts are explained in a broader context of neural connectivity and mental health. 

Difficulty level: Intermediate
Duration: 1:47:22

This tutorial walks participants through the application of dynamic causal modelling (DCM) to fMRI data using MATLAB. Participants are also shown various forms of DCM, how to generate and specify different models, and how to fit them to simulated neural and BOLD data.

 

This lesson corresponds to slides 158-187 of the PDF below. 

Difficulty level: Advanced
Duration: 1:22:10