This lecture and tutorial focuses on measuring human functional brain networks. The lecture and tutorial were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Lecture on functional brain parcellations and a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation which were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Neuronify is an educational tool meant to create intuition for how neurons and neural networks behave. You can use it to combine neurons with different connections, just like the ones we have in our brain, and explore how changes on single cells lead to behavioral changes in important networks. Neuronify is based on an integrate-and-fire model of neurons. This is one of the simplest models of neurons that exist. It focuses on the spike timing of a neuron and ignores the details of the action potential dynamics. These neurons are modeled as simple RC circuits. When the membrane potential is above a certain threshold, a spike is generated and the voltage is reset to its resting potential. This spike then signals other neurons through its synapses.

Neuronify aims to provide a low entry point to simulation-based neuroscience.

This lecture covers structured data, databases, federating neuroscience-relevant databases, ontologies. 

This lecture covers describing and characterizing an input-output relationship.

Part 1 of 2 of a tutorial on statistical models for neural data

Part 2 of 2 of a tutorial on statistical models for neural data.

Introduction to stability analysis of neural models

Introduction to stability analysis of neural models

Oscillations and bursting

Oscillations and bursting

Weakly coupled oscillators

Continuation of coupled oscillators

Firing rate models.

Pattern generation in visual system hallucinations.

Introduction to stability analysis of neural models

Introduction to stability analysis of neural models

Oscillations and bursting

Oscillations and bursting

Weakly coupled oscillators