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This lesson consists of lecture and tutorial components, focusing on resources and tools which facilitate multi-scale brain modeling and simulation. 

Difficulty level: Beginner
Duration: 3:46:21

In this talk, challenges of handling complex neuroscientific data are discussed, as well as tools and services for the annotation, organization, storage, and sharing of these data. 

Difficulty level: Beginner
Duration: 21:49
Speaker: : Thomas Wachtler

This lecture describes the neuroscience data respository G-Node Infrastructure (GIN), which provides platform independent data access and enables easy data publishing. 

Difficulty level: Beginner
Duration: 22:23
Speaker: : Michael Sonntag

This lesson provides an introduction to the course Neuroscience Data Integration Through Use of Digital Brain Atlases, during which attendees will learn about concepts for integration of research data, approaches and resources for assigning anatomical location to brain data, and infrastructure for sharing experimental brain research data. 

Difficulty level: Beginner
Duration: 14:02
Speaker: : Trygve Leergard

This talk covers the various concepts, motivations, and trends within the neuroscientific community related to the sharing and integration of brain research data. 

Difficulty level: Beginner
Duration: 30:39
Speaker: : Jan G. Bjaalie

This lesson focuses on the neuroanatomy of the human brain, delving into macrostructures like cortices, lobes, and hemispheres, and microstructures like neurons and cortical laminae.

Difficulty level: Beginner
Duration: 51:30

This lesson provides an introduction to the European open research infrastructure EBRAINS and its digital brain atlas resources.

Difficulty level: Beginner
Duration: 27:45
Speaker: : Trygve Leergard

In this lesson, attendees will learn about the challenges in assigning experimental brain data to specific locations, as well as the advantages and shortcomings of current location assignment procedures. 

Difficulty level: Beginner
Duration: 32:18

This lesson covers the inherent difficulties associated with integrating neuroscientific data, as well as the current methods and approaches to do so. 

Difficulty level: Beginner
Duration: 25:41
Speaker: : Trygve Leergard

Attendees of this talk will learn about QuickNII, a tool for user-guided affine registration of 2D experimental image data to 3D atlas reference spaces, which also facilitates data integration through standardized coordinate systems. 

Difficulty level: Beginner
Duration: 21:08
Speaker: : Maja Puchades

This lesson provides an overview of DeepSlice, a Python package which aligns histology to the Allen Brain Atlas and Waxholm Rat Atlas using deep learning.

Difficulty level: Beginner
Duration: 17:30
Speaker: : Harry Carey
Course:

Maximize Your Research With Cloud Workspaces is a talk aimed at researchers who are looking for innovative ways to set up and execute their life science data analyses in a collaborative, extensible, open-source cloud environment. This panel discussion is brought to you by MetaCell and scientists from leading universities who share their experiences of advanced analysis and collaborative learning through the Cloud.

 

Difficulty level: Beginner
Duration: 55:43

This brief video provides an introduction to the third session of INCF's Neuroinformatics Assembly 2023, focusing on how to streamling cross-platform data integration in a neuroscientific context. 

Difficulty level: Beginner
Duration: 5:55
Speaker: : Bing-Xing Huo

This talk describes the challenges to sustained operability and success of consortia, why many of these groups flounder after just a few years, and what steps can be taken to mitigate such outcomes. 

Difficulty level: Beginner
Duration: 18:29
Speaker: : Maryann Martone

This talk discusses the BRAIN Initiative Cell Atlas Network (BICAN), taking a look specifically at how this network approaches the design, development, and maintenance of specimen and sequencing library portals. 

Difficulty level: Beginner
Duration: 15:08
Speaker: : GQ Zhang

In this talk, you will hear about the challenges and costs of being FAIR in the many scientific fields, as well as opportunities to transform the ecology of the academic crediting system. 

Difficulty level: Beginner
Duration: 14:56
Speaker: : Zefan Zheng

This brief talk describes the challenge of global data sharing and governance, as well as efforts of the the Brain Research International Data Governance & Exchange (BRIDGE) to develop ready-made workflows to share data globally. 

Difficulty level: Beginner
Duration: 6:47
Speaker: : Kimberly Ray

This talk describes how to use DataLad for your data management and curation techniques  when dealing with animal datasets, which often contain several disparate types of data, including MRI, microscopy, histology, electrocorticography, and behavioral measurements. 

Difficulty level: Beginner
Duration: 3:35

This brief talk covers an analysis technique for multi-band, multi-echo fMRI data, applying a denoising framework which can be used in an automated pipeline.  

Difficulty level: Beginner
Duration: 4:45
Speaker: : David Abbott

This lightning talk describes an automated pipline for positron emission tomography (PET) data. 

Difficulty level: Intermediate
Duration: 7:27