Skip to main content

Numerical data exploration

Difficulty level: Beginner
Duration: 5:05
Speaker: : Barton Poulson

Simple description of statistical data.

Difficulty level: Beginner
Duration: 10:16
Speaker: : Barton Poulson

Basics of hypothesis testing.

Difficulty level: Beginner
Duration: 06:04
Speaker: : Barton Poulson

In this lecture, the speaker demonstrates Neurokernel's module interfacing feature by using it to integrate independently developed models of olfactory and vision LPUs based upon experimentally obtained connectivity information.

Difficulty level: Intermediate
Duration: 29:56
Speaker: : Aurel A. Lazar

Enabling neuroscience research using high performance computing

Difficulty level: Beginner
Duration: 39:27
Speaker: : Subha Sivagnanam

Félix-Antoine Fortin from Calcul Québec gives an introduction to high-performance computing with the Compute Canada network, first providing an overview of use cases for HPC and then a hand-on tutorial.  Though some examples might seem specific to the Calcul Québec, all computing clusters in the Compute Canada network share the same software modules and environments.

 

The lesson was given in the context of the BrainHack School 2020.

Difficulty level: Beginner
Duration: 02:49:34
Speaker: :

The Canadian Open Neuroscience Platform (CONP) Portal is a web interface that facilitates open science for the neuroscience community by simplifying global access to and sharing of datasets and tools. The Portal internalizes the typical cycle of a research project, beginning with data acquisition, followed by data processing with published tools, and ultimately the publication of results with a link to the original dataset.

 

In this video, Samir Das and Tristan Glatard give a short overview of the main features of the CONP Portal.

Difficulty level: Beginner
Duration: 14:03
Speaker: :

Shawn Brown presents an overview of CBRAIN, a web-based platform that allows neuroscientists to perform computationally intensive data analyses by connecting them to high-performance-computing facilities across Canada and around the world.

 

This talk was given in the context of a Ludmer Centre event in 2019.

 

 

Difficulty level: Beginner
Duration: 56:07
Speaker: :

This course will teach you AWS basics right through to advanced cloud computing concepts. There are lots of hands-on exercises using an AWS free tier account to give you practical experience with Amazon Web Services. Visual slides and animations will help you gain a deep understanding of Cloud Computing.

 

This lesson is courtesy of freeCodeCamp.

Difficulty level: Beginner
Duration: 05:27:20
Speaker: :

In this talk the speakers will give a brief introduction of the Fenix Infrastructure and Service Offering, before focusing on Data Safety. The speaker will take the participants through the ETHZ-CSCS offering for EBRAINS and all the HBP Communities highlighting the Infrastructure role in a service implementation in respect of Security. Particular attention will be on showing what tools ETHZ-CSCS provides to a Portal/Service provider such as EBRAINS, MIP/HIP, TVB, NRP amongst others. Finally there will be given a quick glimpse into the future and the role that “multi-tenancy” will play.

Difficulty level: Intermediate
Duration: 20:05
Speaker: : Alex Upton

This lecture and tutorial focuses on measuring human functional brain networks. The lecture and tutorial were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate
Duration: 50:44
Speaker: : Caterina Gratton

Lecture on functional brain parcellations and a set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation which were part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Advanced
Duration: 50:28
Speaker: : Pierre Bellec

This lecture covers structured data, databases, federating neuroscience-relevant databases, ontologies. 

Difficulty level: Beginner
Duration: 1:30:45
Speaker: : Maryann Martone

Since their introduction in 2016, the FAIR data principles have gained increasing recognition and adoption in global neuroscience.  FAIR defines a set of high-level principles and practices for making digital objects, including data, software, and workflows, Findable, Accessible,  Interoperable, and Reusable.  But FAIR is not a specification;  it leaves many of the specifics up to individual scientific disciplines to define.  INCF has been leading the way in promoting, defining, and implementing FAIR data practices for neuroscience.  We have been bringing together researchers, infrastructure providers, industry, and publishers through our programs and networks.  In this session, we will hear some perspectives on FAIR neuroscience from some of these stakeholders who have been working to develop and use FAIR tools for neuroscience.  We will engage in a discussion on questions such as:  how is neuroscience doing with respect to FAIR?  What have been the successes?  What is currently very difficult? Where does neuroscience need to go?

 

This lecture covers FAIR atlases, from their background, their construction, and how they can be created in line with the FAIR principles.

Difficulty level: Beginner
Duration: 14:24
Speaker: : Heidi Kleven

This lecture focuses on ontologies for clinical neurosciences.

Difficulty level: Intermediate
Duration: 21:54

Tutorial on how to simulate brain tumor brains with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls. Authors: Hannelore Aerts, Michael Schirner, Ben Jeurissen, DIrk Van Roost, Eric Achten, Petra Ritter, Daniele Marinazzo

Difficulty level: Intermediate
Duration: 10:01
Speaker: :

The tutorial comprises a didactic video and jupyter notebooks (reproducing publication: Falcon et al. 2016 eNeuro). Contributors: Daniele Marinazzo, Petra Ritter, Paul Triebkorn, Ana Solodkin

Difficulty level: Intermediate
Duration: 7:43
Speaker: :

This presentation by Dr. Michael Schirner population models and phase plane is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc... TVB is a full brain simulation platform.

Difficulty level: Intermediate
Duration: 1:10:41
Speaker: : Michael Schirner

This tutorial by Paul Triebkorn on how to simulate using TVB is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging, brain simulation, personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.

Difficulty level: Intermediate
Duration: 1:29:13
Speaker: : Paul Triebkorn

This presentation by Dionysios Perdikis is part of the TVB Node 10 series, a 4 day workshop dedicated to learning about The Virtual Brain, brain imaging. brain simulation. personalised brain models, TVB use cases, etc. TVB is a full brain simulation platform.

Difficulty level: Intermediate
Duration: 36:10