Course:

In this lesson, users will learn about human brain signals as measured by electroencephalography (EEG), as well as associated neural signatures such as steady state visually evoked potentials (SSVEPs) and alpha oscillations.

Difficulty level: Intermediate

Duration: 8:51

Speaker: : Mike X. Cohen

Course:

This lecture describes the principles of EEG electrode placement in both 2- and 3-dimensional formats.

Difficulty level: Intermediate

Duration: 12:16

Speaker: : Mike X. Cohen

Course:

This tutorial walks users through performing Fourier Transform (FFT) spectral analysis of a single EEG channel using MATLAB.

Difficulty level: Intermediate

Duration: 13:39

Speaker: : Mike X. Cohen

Course:

This tutorial builds on the previous lesson's demonstration of spectral analysis of one EEG channel. Here, users will learn how to compute and visualize spectral power from all EEG channels using MATLAB.

Difficulty level: Intermediate

Duration: 12:34

Speaker: : Mike X. Cohen

Course:

In this lesson, users will learn more about the steady-state visually evoked potential (SSEVP), as well as how to create and interpret topographical maps derived from such studies.

Difficulty level: Intermediate

Duration: 9:10

Speaker: : Mike X. Cohen

Course:

This lesson teaches users how to extract edogenous brain waves from EEG data, specifically oscillations constrained to the 8-12 Hz frequency band, conventionally named alpha.

Difficulty level: Intermediate

Duration: 13:23

Speaker: : Mike X. Cohen

Course:

In the final lesson of this module, users will learn how to correlate endogenous alpha power with SSVEP amplitude from EEG data using MATLAB.

Difficulty level: Intermediate

Duration: 12:36

Speaker: : Mike X. Cohen

Course:

This lesson provides an introduction to biologically detailed computational modelling of neural dynamics, including neuron membrane potential simulation and F-I curves.

Difficulty level: Intermediate

Duration: 8:21

Speaker: : Mike X. Cohen

Course:

In this lesson, users learn how to use MATLAB to build an adaptive exponential integrate and fire (AdEx) neuron model.

Difficulty level: Intermediate

Duration: 22:01

Speaker: : Mike X. Cohen

Course:

In this lesson, users learn about the practical differences between MATLAB scripts and functions, as well as how to embed their neuronal simulation into a callable function.

Difficulty level: Intermediate

Duration: 11:20

Speaker: : Mike X. Cohen

Course:

This lesson teaches users how to generate a frequency-current (F-I) curve, which describes the function that relates the net synaptic current (I) flowing into a neuron to its firing rate (F).

Difficulty level: Intermediate

Duration: 20:39

Speaker: : Mike X. Cohen

Course:

This lesson is a general overview of overarching concepts in neuroinformatics research, with a particular focus on clinical approaches to defining, measuring, studying, diagnosing, and treating various brain disorders. Also described are the complex, multi-level nature of brain disorders and the data associated with them, from genes and individual cells up to cortical microcircuits and whole-brain network dynamics. Given the heterogeneity of brain disorders and their underlying mechanisms, this lesson lays out a case for multiscale neuroscience data integration.

Difficulty level: Intermediate

Duration: 1:09:33

Speaker: : Sean Hill

This is a continuation of the talk on the cellular mechanisms of neuronal communication, this time at the level of brain microcircuits and associated global signals like those measureable by electroencephalography (EEG). This lecture also discusses EEG biomarkers in mental health disorders, and how those cortical signatures may be simulated digitally.

Difficulty level: Intermediate

Duration: 1:11:04

Speaker: : Etay Hay

This is an in-depth guide on EEG signals and their interaction within brain microcircuits. Participants are also shown techniques and software for simulating, analyzing, and visualizing these signals.

Difficulty level: Intermediate

Duration: 1:30:41

Speaker: : Frank Mazza

Course:

This lesson describes the principles underlying functional magnetic resonance imaging (fMRI), diffusion-weighted imaging (DWI), tractography, and parcellation. These tools and concepts are explained in a broader context of neural connectivity and mental health.

Difficulty level: Intermediate

Duration: 1:47:22

Speaker: : Erin Dickie and John Griffiths

Course:

This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices.

Difficulty level: Intermediate

Duration: 1:39:04

Speaker: : Erin Dickie and John Griffiths

Course:

In this tutorial on simulating whole-brain activity using Python, participants can follow along using corresponding code and repositories, learning the basics of neural oscillatory dynamics, evoked responses and EEG signals, ultimately leading to the design of a network model of whole-brain anatomical connectivity.

Difficulty level: Intermediate

Duration: 1:16:10

Speaker: : John Griffiths

This is a tutorial on designing a Bayesian inference model to map belief trajectories, with emphasis on gaining familiarity with Hierarchical Gaussian Filters (HGFs).

This lesson corresponds to slides 65-90 of the PDF below.

Difficulty level: Intermediate

Duration: 1:15:04

Speaker: : Daniel Hauke

Tutorial on how to simulate brain tumor brains with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage). This tutorial comprises a didactic video, jupyter notebooks, and full data set for the construction of virtual brains from patients and health controls. Authors: Hannelore Aerts, Michael Schirner, Ben Jeurissen, DIrk Van Roost, Eric Achten, Petra Ritter, Daniele Marinazzo

Difficulty level: Intermediate

Duration: 10:01

Speaker: :

Tutorial on collaborating with Git and GitHub. This tutorial was part of the 2019 Neurohackademy, a 2-week hands-on summer institute in neuroimaging and data science held at the University of Washington eScience Institute.

Difficulty level: Intermediate

Duration: 2:15:50

Speaker: : Elizabeth DuPre

- (-) Electroencephalography (EEG) (10)
- Deep learning (10)
- Bayesian networks (2)
- (-) Clinical neuroinformatics (2)
- Standards and Best Practices (1)
- Neuroimaging (18)
- Tools (1)
- Clinical neuroscience (1)
- General neuroscience (6)
- (-) Computational neuroscience (5)
- Statistics (3)
- (-) Computer Science (1)
- Genomics (8)
- (-) Data science (2)
- Open science (4)