This tutorial introduces pipelines and methods to compute brain connectomes from fMRI data. With corresponding code and repositories, participants can follow along and learn how to programmatically preprocess, curate, and analyze functional and structural brain data to produce connectivity matrices.
This lecture and tutorial focuses on measuring human functional brain networks, as well as how to account for inherent variability within those networks.
This lecture introduces you to the basics of the Amazon Web Services public cloud. It covers the fundamentals of cloud computing and goes through both the motivations and processes involved in moving your research computing to the cloud.
This lecture covers concepts associated with neural nets, including rotation and squashing, and is a part of the Deep Learning Course at New York University's Center for Data Science (CDS).
This lecture covers the concept of neural nets training (tools, classification with neural nets, and PyTorch implementation) and is a part of the Deep Learning Course at NYU's Center for Data Science.
This lecture discusses the concept of natural signals properties and the convolutional nets in practice and is a part of the Deep Learning Course at NYU's Center for Data Science.
This lecture covers the concept of recurrent neural networks: vanilla and gated (LSTM) and is a part of the Deep Learning Course at NYU's Center for Data Science.
This lecture covers the concept of inference in latent variable energy based models (LV-EBMs) and is a part of the Deep Learning Course at NYU's Center for Data Science.
This tutorial covers the concept of training latent variable energy based models (LV-EBMs) and is is a part of the Deep Learning Course at NYU's Center for Data Science.
This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics.
This is a tutorial on using the open-source software PRSice to calculate a set of polygenic risk scores (PRS) for a study sample. Users will also learn how to read PRS into R, visualize distributions, and perform basic association analyses.
This is a tutorial introducing participants to the basics of RNA-sequencing data and how to analyze its features using Seurat.
This tutorial demonstrates how to perform cell-type deconvolution in order to estimate how proportions of cell-types in the brain change in response to various conditions. While these techniques may be useful in addressing a wide range of scientific questions, this tutorial will focus on the cellular changes associated with major depression (MDD).
Similarity Network Fusion (SNF) is a computational method for data integration across various kinds of measurements, aimed at taking advantage of the common as well as complementary information in different data types. This workshop walks participants through running SNF on EEG and genomic data using RStudio.