Course:

This tutorial demonstrates how to work with neuronal data using MATLAB, including actional potentials and spike counts, orientation tuing curves in visual cortex, and spatial maps of firing rates.

Difficulty level: Intermediate

Duration: 5:17

Speaker: : Mike X. Cohen

Course:

This lesson instructs users on how to import electrophysiological neural data into MATLAB, as well as how to convert spikes to a data matrix.

Difficulty level: Intermediate

Duration: 11:37

Speaker: : Mike X. Cohen

Course:

In this lesson, users will learn how to appropriately sort and bin neural spikes, allowing for the generation of a common and powerful visualization tool in neuroscience, the histogram.

Difficulty level: Intermediate

Duration: 5:31

Speaker: : Mike X. Cohen

Course:

Followers of this lesson will learn how to compute, visualize and quantify the tuning curves of individual neurons.

Difficulty level: Intermediate

Duration: 13:48

Speaker: : Mike X. Cohen

Course:

This lesson demonstrates how to programmatically generate a spatial map of neuronal spike counts using MATLAB.

Difficulty level: Intermediate

Duration: 12:16

Speaker: : Mike X. Cohen

Course:

In this lesson, users are shown how to create a spatial map of neuronal orientation tuning.

Difficulty level: Intermediate

Duration: 13:11

Speaker: : Mike X. Cohen

This is the first of two workshops on reproducibility in science, during which participants are introduced to concepts of FAIR and open science. After discussing the definition of and need for FAIR science, participants are walked through tutorials on installing and using Github and Docker, the powerful, open-source tools for versioning and publishing code and software, respectively.

Difficulty level: Intermediate

Duration: 1:20:58

Speaker: : Erin Dickie and Sejal Patel

This is a hands-on tutorial on PLINK, the open source whole genome association analysis toolset. The aims of this tutorial are to teach users how to perform basic quality control on genetic datasets, as well as to identify and understand GWAS summary statistics.

Difficulty level: Intermediate

Duration: 1:27:18

Speaker: : Dan Felsky

This is a tutorial on using the open-source software PRSice to calculate a set of polygenic risk scores (PRS) for a study sample. Users will also learn how to read PRS into R, visualize distributions, and perform basic association analyses.

Difficulty level: Intermediate

Duration: 1:53:34

Speaker: : Dan Felsky

Course:

This video will document the process of creating a pipeline rule for batch processing on brainlife.

Difficulty level: Intermediate

Duration: 0:57

Speaker: :

Course:

This video will document the process of launching a Jupyter Notebook for group-level analyses directly from brainlife.

Difficulty level: Intermediate

Duration: 0:53

Speaker: :

This lesson contains practical exercises which accompanies the first few lessons of the Neuroscience for Machine Learners (Neuro4ML) course.

Difficulty level: Intermediate

Duration: 5:58

Speaker: : Dan Goodman

This lesson introduces some practical exercises which accompany the Synapses and Networks portion of this Neuroscience for Machine Learners course.

Difficulty level: Intermediate

Duration: 3:51

Speaker: : Dan Goodman

This video briefly goes over the exercises accompanying Week 6 of the Neuroscience for Machine Learners (Neuro4ML) course, *Understanding Neural Networks*.

Difficulty level: Intermediate

Duration: 2:43

Speaker: : Marcus Ghosh

This tutorial covers the fundamentals of collaborating with Git and GitHub.

Difficulty level: Intermediate

Duration: 2:15:50

Speaker: : Elizabeth DuPre

Course:

This lesson gives an introduction to the central concepts of machine learning, and how they can be applied in Python using the scikit-learn package.

Difficulty level: Intermediate

Duration: 2:22:28

Speaker: : Jake Vanderplas

Course:

This lecture introduces you to the basics of the Amazon Web Services public cloud. It covers the fundamentals of cloud computing and goes through both the motivations and processes involved in moving your research computing to the cloud.

Difficulty level: Intermediate

Duration: 3:09:12

Speaker: : Amanda Tan & Ariel Rokem

Course:

This lecture covers the rationale for developing the DAQCORD, a framework for the design, documentation, and reporting of data curation methods in order to advance the scientific rigour, reproducibility, and analysis of data.

Difficulty level: Intermediate

Duration: 17:08

Speaker: : Ari Ercole

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