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Ontologies for Clinical Neurosciences
Course:
The future of medical data sharing in clinical neurosciences

This lecture focuses on ontologies for clinical neurosciences.

Difficulty level: Intermediate
Duration: 21:54
Speaker: : Martin Hofmann-Apitius
Extracellular electrophysiology in PyNWB
Course:
Introduction to Neurodata Without Borders (NWB) for Python users I

Learn how to create a standard extracellular electrophysiology dataset in NWB using Python

Difficulty level: Intermediate
Duration: 23:10
Speaker: : Ryan Ly
Optical physiology in PyNWB
Course:
Introduction to Neurodata Without Borders (NWB) for Python users I

Learn how to create a standard calcium imaging dataset in NWB using Python

Difficulty level: Intermediate
Duration: 31:04
Speaker: : Ryan Ly
Intracellular electrophysiology basics in NWB
Course:
Introduction to Neurodata Without Borders (NWB) for Python users I

Learn how to create a standard intracellular electrophysiology dataset in NWB

Difficulty level: Intermediate
Duration: 20:23
Speaker: : Pamela Baker
Intracellular electrophysiology structured metadata in NWB
Course:
Introduction to Neurodata Without Borders (NWB) for Python users II

Learn how to use the icephys-metadata extension to enter meta-data detailing your experimental paradigm

Difficulty level: Intermediate
Duration: 27:18
Speaker: : Oliver Ruebel
Extracellular electrophysiology in MatNWB
Course:
Introduction to Neurodata Without Borders (NWB) for MATLAB users I

Learn how to create a standard extracellular electrophysiology dataset in NWB using MATLAB

Difficulty level: Intermediate
Duration: 45:46
Speaker: : Ben Dichter
Optical physiology in MatNWB
Course:
Introduction to Neurodata Without Borders (NWB) for MATLAB users I

Learn how to create a standard calcium imaging dataset in NWB using MATLAB

Difficulty level: Intermediate
Duration: 39:10
Speaker: : Ben Dichter
Intracellular electrophysiology basics in NWB (Python and MATLAB)
Course:
Introduction to Neurodata Without Borders (NWB) for MATLAB users I

Learn how to create a standard intracellular electrophysiology dataset in NWB

Difficulty level: Intermediate
Duration: 20:22
Speaker: : Pamela Baker
Brainstorm for analyzing extracellular electrophysiology data
Course:
Introduction to Neurodata Without Borders (NWB) for MATLAB users II

Overview of the Braintorm package for analyzing extracellular electrophysiology, including preprocessing, spike sorting, trial alignment, and spectrotemporal decomposition

Difficulty level: Intermediate
Duration: 47:47
Speaker: : Konstantinos Nasiotis
CaImAn for optical physiology processing and analysis
Course:
Introduction to Neurodata Without Borders (NWB) for Python users II

Overview of the CaImAn package, and demonstration of usage with NWB

Difficulty level: Intermediate
Duration: 44:37
Speaker: : Andrea Giovannucci
SpikeInterface for building seamless extracellular electrophysiology processing pipelines
Course:
Introduction to Neurodata Without Borders (NWB) for Python users II

Overview of the SpikeInterface package, including demonstration of data loading, preprocessing, spike sorting, and comparison of spike sorters

Difficulty level: Intermediate
Duration: 1:10:28
Speaker: : Alessio Buccino
NWBWidgets for inteactively exploring NWB files
Course:
Introduction to Neurodata Without Borders (NWB) for Python users II

Overview of the NWBWidgets package, including coverage of different data types, and information for building custom widgets within this framework

Difficulty level: Intermediate
Duration: 47:15
Speaker: : Ben Dichter

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