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This lecture presents the Medical Informatics Platform's data federation in epilepsy.

Difficulty level: Intermediate
Duration: 27:09
Speaker: : Philippe Ryvlin

This lecture aims to help researchers, students, and health care professionals understand the place for neuroinformatics in the patient journey using the exemplar of an epilepsy patient. 

Difficulty level: Intermediate
Duration: 1:32:53

Explore how to setup an epileptic seizure simulation with the TVB graphical user interface. This lesson will show you how to program the epileptor model in the brain network to simulate a epileptic seizure originating in the hippocampus. It will also show how to upload and view mouse connectivity data, as well as give a short introduction to the python script interface of TVB.

Difficulty level: Intermediate
Duration: 58:06
Speaker: : Paul Triebkorn

This talk introduces data sharing initiatives in Epilepsy, particularly across Europe.

Difficulty level: Intermediate
Duration: 13:56
Speaker: : J. Helen Cross

This tutorial covers the fundamentals of collaborating with Git and GitHub.

Difficulty level: Intermediate
Duration: 2:15:50
Speaker: : Elizabeth DuPre
Course:

This book was written with the goal of introducing researchers and students in a variety of research fields to the intersection of data science and neuroimaging. This book reflects our own experience of doing research at the intersection of data science and neuroimaging and it is based on our experience working with students and collaborators who come from a variety of backgrounds and have a variety of reasons for wanting to use data science approaches in their work. The tools and ideas that we chose to write about are all tools and ideas that we have used in some way in our own research. Many of them are tools that we use on a daily basis in our work. This was important to us for a few reasons: the first is that we want to teach people things that we ourselves find useful. Second, it allowed us to write the book with a focus on solving specific analysis tasks. For example, in many of the chapters you will see that we walk you through ideas while implementing them in code, and with data. We believe that this is a good way to learn about data analysis, because it provides a connecting thread from scientific questions through the data and its representation to implementing specific answers to these questions. Finally, we find these ideas compelling and fruitful. That’s why we were drawn to them in the first place. We hope that our enthusiasm about the ideas and tools described in this book will be infectious enough to convince the readers of their value.

 

Difficulty level: Intermediate
Duration:
Speaker: :

This talk presents state-of-the-art methods for ensuring data privacy with a particular focus on medical data sharing across multiple organizations.

Difficulty level: Intermediate
Duration: 22:49

This lecture talks about the usage of knowledge graphs in hospitals and related challenges of semantic interoperability.

Difficulty level: Intermediate
Duration: 24:32

In this lesson, users will learn about human brain signals as measured by electroencephalography (EEG), as well as associated neural signatures such as steady state visually evoked potentials (SSVEPs) and alpha oscillations. 

Difficulty level: Intermediate
Duration: 8:51
Speaker: : Mike X. Cohen

This lecture describes the principles of EEG electrode placement in both 2- and 3-dimensional formats. 

Difficulty level: Intermediate
Duration: 12:16
Speaker: : Mike X. Cohen

This tutorial walks users through performing Fourier Transform (FFT) spectral analysis of a single EEG channel using MATLAB. 

Difficulty level: Intermediate
Duration: 13:39
Speaker: : Mike X. Cohen

This tutorial builds on the previous lesson's demonstration of spectral analysis of one EEG channel. Here, users will learn how to compute and visualize spectral power from all EEG channels using MATLAB. 

Difficulty level: Intermediate
Duration: 12:34
Speaker: : Mike X. Cohen

In this lesson, users will learn more about the steady-state visually evoked potential (SSEVP), as well as how to create and interpret topographical maps derived from such studies. 

Difficulty level: Intermediate
Duration: 9:10
Speaker: : Mike X. Cohen

This lesson teaches users how to extract edogenous brain waves from EEG data, specifically oscillations constrained to the 8-12 Hz frequency band, conventionally named alpha. 

Difficulty level: Intermediate
Duration: 13:23
Speaker: : Mike X. Cohen

In the final lesson of this module, users will learn how to correlate endogenous alpha power with SSVEP amplitude from EEG data using MATLAB.

Difficulty level: Intermediate
Duration: 12:36
Speaker: : Mike X. Cohen

This is a continuation of the talk on the cellular mechanisms of neuronal communication, this time at the level of brain microcircuits and associated global signals like those measureable by electroencephalography (EEG). This lecture also discusses EEG biomarkers in mental health disorders, and how those cortical signatures may be simulated digitally.

Difficulty level: Intermediate
Duration: 1:11:04
Speaker: : Etay Hay

This is an in-depth guide on EEG signals and their interaction within brain microcircuits. Participants are also shown techniques and software for simulating, analyzing, and visualizing these signals.

Difficulty level: Intermediate
Duration: 1:30:41
Speaker: : Frank Mazza

In this tutorial on simulating whole-brain activity using Python, participants can follow along using corresponding code and repositories, learning the basics of neural oscillatory dynamics, evoked responses and EEG signals, ultimately leading to the design of a network model of whole-brain anatomical connectivity. 

Difficulty level: Intermediate
Duration: 1:16:10
Speaker: : John Griffiths

This lecture gives an overview of how to prepare and preprocess neuroimaging (EEG/MEG) data for use in TVB.  

Difficulty level: Intermediate
Duration: 1:40:52
Speaker: : Paul Triebkorn

This lesson is a general overview of overarching concepts in neuroinformatics research, with a particular focus on clinical approaches to defining, measuring, studying, diagnosing, and treating various brain disorders. Also described are the complex, multi-level nature of brain disorders and the data associated with them, from genes and individual cells up to cortical microcircuits and whole-brain network dynamics. Given the heterogeneity of brain disorders and their underlying mechanisms, this lesson lays out a case for multiscale neuroscience data integration.

Difficulty level: Intermediate
Duration: 1:09:33
Speaker: : Sean Hill